miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 5' -57.1 NC_006151.1 + 121654 0.67 0.812614
Target:  5'- cGGCGGAc-GGGcgGGCGgAGGGGgGg -3'
miRNA:   3'- aCCGCCUacUCCaaCUGCgUCUCCgC- -5'
29564 5' -57.1 NC_006151.1 + 135105 0.67 0.803818
Target:  5'- gGGCGGgcGGcGGUa-GCGCGcGGGGCGg -3'
miRNA:   3'- aCCGCCuaCU-CCAacUGCGU-CUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 66932 0.67 0.803818
Target:  5'- aGGCGGGggcGAGGgcaaaGGCGgCGGcGGGCGc -3'
miRNA:   3'- aCCGCCUa--CUCCaa---CUGC-GUC-UCCGC- -5'
29564 5' -57.1 NC_006151.1 + 29337 0.67 0.794866
Target:  5'- cGGCGGGagagaGGGGggGGgGagaGGGGGCGg -3'
miRNA:   3'- aCCGCCUa----CUCCaaCUgCg--UCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 16696 0.67 0.794866
Target:  5'- uUGGUGGGaagGGGGagUGACGuCAG-GGCa -3'
miRNA:   3'- -ACCGCCUa--CUCCa-ACUGC-GUCuCCGc -5'
29564 5' -57.1 NC_006151.1 + 9624 0.67 0.794866
Target:  5'- cGGCGGcgagGGGGgaagcggGAgGgAGAGGCGc -3'
miRNA:   3'- aCCGCCua--CUCCaa-----CUgCgUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 1804 0.67 0.794866
Target:  5'- gGGcCGGG-GAGGcaGGCGCcggGGAGGCa -3'
miRNA:   3'- aCC-GCCUaCUCCaaCUGCG---UCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 26303 0.67 0.785768
Target:  5'- gGGgGGGUGGGGggagGaaagaacaGCGCGG-GGCGa -3'
miRNA:   3'- aCCgCCUACUCCaa--C--------UGCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 27301 0.67 0.785768
Target:  5'- uUGGgGGGcgugGGGGUcGAgGCGGGGGaCGg -3'
miRNA:   3'- -ACCgCCUa---CUCCAaCUgCGUCUCC-GC- -5'
29564 5' -57.1 NC_006151.1 + 23460 0.67 0.780243
Target:  5'- gGGCGGGUGAucgUGAgcccgugcuucaugcCGCAGGGGUa -3'
miRNA:   3'- aCCGCCUACUccaACU---------------GCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 33405 0.67 0.776532
Target:  5'- aGGCGGA-GAGGgcGAgcgagacaCGCacggggAGAGGCGc -3'
miRNA:   3'- aCCGCCUaCUCCaaCU--------GCG------UCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 122469 0.67 0.776532
Target:  5'- cGGCGGGcgccGAGGccgggGACGCGGGcgagacGGCGc -3'
miRNA:   3'- aCCGCCUa---CUCCaa---CUGCGUCU------CCGC- -5'
29564 5' -57.1 NC_006151.1 + 41311 0.67 0.776532
Target:  5'- gGGgGGggGGGGggGugGUGGuGGUGu -3'
miRNA:   3'- aCCgCCuaCUCCaaCugCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 115433 0.67 0.776532
Target:  5'- gGGCGGAaGAGGUcgcgcgUGAUGCGcGcGGCc -3'
miRNA:   3'- aCCGCCUaCUCCA------ACUGCGU-CuCCGc -5'
29564 5' -57.1 NC_006151.1 + 73821 0.67 0.776532
Target:  5'- aUGGCGcc-GAGGUggucGGCGCaggcaaAGAGGCGu -3'
miRNA:   3'- -ACCGCcuaCUCCAa---CUGCG------UCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 97366 0.67 0.776532
Target:  5'- cGGCGGcgGcGGgc-GCgGCGGGGGCGu -3'
miRNA:   3'- aCCGCCuaCuCCaacUG-CGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 130868 0.67 0.775602
Target:  5'- gGGCGGGaccgcagUGGGcGgcGGCgGUGGAGGCGg -3'
miRNA:   3'- aCCGCCU-------ACUC-CaaCUG-CGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 122949 0.68 0.767168
Target:  5'- cGGCGGcgccGcGGggGGCGCGGAcgccGGCGa -3'
miRNA:   3'- aCCGCCua--CuCCaaCUGCGUCU----CCGC- -5'
29564 5' -57.1 NC_006151.1 + 25386 0.68 0.757684
Target:  5'- cGGCGGcgGuGGUUcucgaccGCGaCGGGGGCGc -3'
miRNA:   3'- aCCGCCuaCuCCAAc------UGC-GUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 128052 0.68 0.757684
Target:  5'- cGGCGGcagcgGcGGcUG-CGCGGGGGCGa -3'
miRNA:   3'- aCCGCCua---CuCCaACuGCGUCUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.