Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29564 | 5' | -57.1 | NC_006151.1 | + | 121654 | 0.67 | 0.812614 |
Target: 5'- cGGCGGAc-GGGcgGGCGgAGGGGgGg -3' miRNA: 3'- aCCGCCUacUCCaaCUGCgUCUCCgC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 135105 | 0.67 | 0.803818 |
Target: 5'- gGGCGGgcGGcGGUa-GCGCGcGGGGCGg -3' miRNA: 3'- aCCGCCuaCU-CCAacUGCGU-CUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 66932 | 0.67 | 0.803818 |
Target: 5'- aGGCGGGggcGAGGgcaaaGGCGgCGGcGGGCGc -3' miRNA: 3'- aCCGCCUa--CUCCaa---CUGC-GUC-UCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 29337 | 0.67 | 0.794866 |
Target: 5'- cGGCGGGagagaGGGGggGGgGagaGGGGGCGg -3' miRNA: 3'- aCCGCCUa----CUCCaaCUgCg--UCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 16696 | 0.67 | 0.794866 |
Target: 5'- uUGGUGGGaagGGGGagUGACGuCAG-GGCa -3' miRNA: 3'- -ACCGCCUa--CUCCa-ACUGC-GUCuCCGc -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 9624 | 0.67 | 0.794866 |
Target: 5'- cGGCGGcgagGGGGgaagcggGAgGgAGAGGCGc -3' miRNA: 3'- aCCGCCua--CUCCaa-----CUgCgUCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 1804 | 0.67 | 0.794866 |
Target: 5'- gGGcCGGG-GAGGcaGGCGCcggGGAGGCa -3' miRNA: 3'- aCC-GCCUaCUCCaaCUGCG---UCUCCGc -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 26303 | 0.67 | 0.785768 |
Target: 5'- gGGgGGGUGGGGggagGaaagaacaGCGCGG-GGCGa -3' miRNA: 3'- aCCgCCUACUCCaa--C--------UGCGUCuCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 27301 | 0.67 | 0.785768 |
Target: 5'- uUGGgGGGcgugGGGGUcGAgGCGGGGGaCGg -3' miRNA: 3'- -ACCgCCUa---CUCCAaCUgCGUCUCC-GC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 23460 | 0.67 | 0.780243 |
Target: 5'- gGGCGGGUGAucgUGAgcccgugcuucaugcCGCAGGGGUa -3' miRNA: 3'- aCCGCCUACUccaACU---------------GCGUCUCCGc -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 33405 | 0.67 | 0.776532 |
Target: 5'- aGGCGGA-GAGGgcGAgcgagacaCGCacggggAGAGGCGc -3' miRNA: 3'- aCCGCCUaCUCCaaCU--------GCG------UCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 122469 | 0.67 | 0.776532 |
Target: 5'- cGGCGGGcgccGAGGccgggGACGCGGGcgagacGGCGc -3' miRNA: 3'- aCCGCCUa---CUCCaa---CUGCGUCU------CCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 41311 | 0.67 | 0.776532 |
Target: 5'- gGGgGGggGGGGggGugGUGGuGGUGu -3' miRNA: 3'- aCCgCCuaCUCCaaCugCGUCuCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 115433 | 0.67 | 0.776532 |
Target: 5'- gGGCGGAaGAGGUcgcgcgUGAUGCGcGcGGCc -3' miRNA: 3'- aCCGCCUaCUCCA------ACUGCGU-CuCCGc -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 73821 | 0.67 | 0.776532 |
Target: 5'- aUGGCGcc-GAGGUggucGGCGCaggcaaAGAGGCGu -3' miRNA: 3'- -ACCGCcuaCUCCAa---CUGCG------UCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 97366 | 0.67 | 0.776532 |
Target: 5'- cGGCGGcgGcGGgc-GCgGCGGGGGCGu -3' miRNA: 3'- aCCGCCuaCuCCaacUG-CGUCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 130868 | 0.67 | 0.775602 |
Target: 5'- gGGCGGGaccgcagUGGGcGgcGGCgGUGGAGGCGg -3' miRNA: 3'- aCCGCCU-------ACUC-CaaCUG-CGUCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 122949 | 0.68 | 0.767168 |
Target: 5'- cGGCGGcgccGcGGggGGCGCGGAcgccGGCGa -3' miRNA: 3'- aCCGCCua--CuCCaaCUGCGUCU----CCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 25386 | 0.68 | 0.757684 |
Target: 5'- cGGCGGcgGuGGUUcucgaccGCGaCGGGGGCGc -3' miRNA: 3'- aCCGCCuaCuCCAAc------UGC-GUCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 128052 | 0.68 | 0.757684 |
Target: 5'- cGGCGGcagcgGcGGcUG-CGCGGGGGCGa -3' miRNA: 3'- aCCGCCua---CuCCaACuGCGUCUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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