miRNA display CGI


Results 21 - 40 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 5' -57.1 NC_006151.1 + 127371 0.72 0.526823
Target:  5'- gGGCGGGgaccGcGGggGugGCGGGGGCc -3'
miRNA:   3'- aCCGCCUa---CuCCaaCugCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 30175 0.71 0.546624
Target:  5'- gGGCGGGUGAGaGagGuCGgGGAGGCc -3'
miRNA:   3'- aCCGCCUACUC-CaaCuGCgUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 34402 0.71 0.556613
Target:  5'- gUGGgGGAgagGAGGggGugGguG-GGCGa -3'
miRNA:   3'- -ACCgCCUa--CUCCaaCugCguCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 84398 0.71 0.556613
Target:  5'- gGGCGGGgagcGGGUgGGCGCGGugauaAGGCGg -3'
miRNA:   3'- aCCGCCUac--UCCAaCUGCGUC-----UCCGC- -5'
29564 5' -57.1 NC_006151.1 + 22273 0.71 0.556613
Target:  5'- gGGCGGggGgaAGGUcGGCGCGGGcacGGCGu -3'
miRNA:   3'- aCCGCCuaC--UCCAaCUGCGUCU---CCGC- -5'
29564 5' -57.1 NC_006151.1 + 10211 0.71 0.556613
Target:  5'- cGGCGGcugcaGAGGcggcugcgGACGCGGAGGgGg -3'
miRNA:   3'- aCCGCCua---CUCCaa------CUGCGUCUCCgC- -5'
29564 5' -57.1 NC_006151.1 + 127270 0.71 0.566655
Target:  5'- gUGGCcGGUGAGGUcgaUGACGgguCGGGGGUGc -3'
miRNA:   3'- -ACCGcCUACUCCA---ACUGC---GUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 93738 0.71 0.576742
Target:  5'- cUGGUGGAUGcGGgccucgucggGGCGCGG-GGCGu -3'
miRNA:   3'- -ACCGCCUACuCCaa--------CUGCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 89173 0.71 0.586869
Target:  5'- aGGCGGGcgcgGGGGUcgggGGCGgAGAgGGCGa -3'
miRNA:   3'- aCCGCCUa---CUCCAa---CUGCgUCU-CCGC- -5'
29564 5' -57.1 NC_006151.1 + 44364 0.71 0.594995
Target:  5'- cGGCGGggGAgagGGUUGcgacggucccgcCGCGGGGGCGc -3'
miRNA:   3'- aCCGCCuaCU---CCAACu-----------GCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 4204 0.71 0.597029
Target:  5'- aGGCGGGcccGAGGgcggccggGGCGCGGgcGGGCGc -3'
miRNA:   3'- aCCGCCUa--CUCCaa------CUGCGUC--UCCGC- -5'
29564 5' -57.1 NC_006151.1 + 33239 0.7 0.617418
Target:  5'- gGGCGGGagGGGGUccgggggaagggUGGgGCGGuGGCGg -3'
miRNA:   3'- aCCGCCUa-CUCCA------------ACUgCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 67450 0.7 0.617418
Target:  5'- gGcGCGGgcGGGGggGuCGCAGAGcGCGc -3'
miRNA:   3'- aC-CGCCuaCUCCaaCuGCGUCUC-CGC- -5'
29564 5' -57.1 NC_006151.1 + 29376 0.7 0.627633
Target:  5'- gGGCgGGAUGGGGggagagGAgaGgAGAGGCGg -3'
miRNA:   3'- aCCG-CCUACUCCaa----CUg-CgUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 5052 0.7 0.627633
Target:  5'- cGGCGGAgGAGGa-GGCGgaGGAGGCc -3'
miRNA:   3'- aCCGCCUaCUCCaaCUGCg-UCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 118408 0.7 0.627633
Target:  5'- cGGUGGAcaacgccGAGGagacgacgGGCGCGGAGGUGu -3'
miRNA:   3'- aCCGCCUa------CUCCaa------CUGCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 3743 0.7 0.63172
Target:  5'- cGGCGGcgGGGGagcUGGCGUagccggaggagccggAGAGGCc -3'
miRNA:   3'- aCCGCCuaCUCCa--ACUGCG---------------UCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 133354 0.7 0.637851
Target:  5'- cGGCGGcgGuGGUgguggugGugGUGGuGGCGg -3'
miRNA:   3'- aCCGCCuaCuCCAa------CugCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 133633 0.7 0.648065
Target:  5'- cGGCGGccGGGGcgGugGUccgggugcgAGAGGCGc -3'
miRNA:   3'- aCCGCCuaCUCCaaCugCG---------UCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 45098 0.7 0.648065
Target:  5'- gUGGCGucGAUGGGGUcgUGcCGUgggacgGGAGGCGg -3'
miRNA:   3'- -ACCGC--CUACUCCA--ACuGCG------UCUCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.