miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 5' -57.1 NC_006151.1 + 20129 0.69 0.718733
Target:  5'- gGGCuGGggGGcGGgcGcCGCGGGGGCGg -3'
miRNA:   3'- aCCG-CCuaCU-CCaaCuGCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 20455 0.67 0.820392
Target:  5'- gGGCucggGGGUGgcgccggucccccGGGggGGCGCGGGGGUc -3'
miRNA:   3'- aCCG----CCUAC-------------UCCaaCUGCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 21492 0.69 0.718733
Target:  5'- aGGCGGccGGGGggcgcgGGCGUcaccGGGGCGg -3'
miRNA:   3'- aCCGCCuaCUCCaa----CUGCGu---CUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 22273 0.71 0.556613
Target:  5'- gGGCGGggGgaAGGUcGGCGCGGGcacGGCGu -3'
miRNA:   3'- aCCGCCuaC--UCCAaCUGCGUCU---CCGC- -5'
29564 5' -57.1 NC_006151.1 + 23005 0.77 0.264817
Target:  5'- cGcGCGGGUGGGGgcgcggggGugGUGGAGGCGg -3'
miRNA:   3'- aC-CGCCUACUCCaa------CugCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 23460 0.67 0.780243
Target:  5'- gGGCGGGUGAucgUGAgcccgugcuucaugcCGCAGGGGUa -3'
miRNA:   3'- aCCGCCUACUccaACU---------------GCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 25386 0.68 0.757684
Target:  5'- cGGCGGcgGuGGUUcucgaccGCGaCGGGGGCGc -3'
miRNA:   3'- aCCGCCuaCuCCAAc------UGC-GUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 26274 0.72 0.507297
Target:  5'- gGGCaaacGAUGGGGcgGACGguGGGGUGg -3'
miRNA:   3'- aCCGc---CUACUCCaaCUGCguCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 26303 0.67 0.785768
Target:  5'- gGGgGGGUGGGGggagGaaagaacaGCGCGG-GGCGa -3'
miRNA:   3'- aCCgCCUACUCCaa--C--------UGCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 27122 0.66 0.837992
Target:  5'- cGGCGGccGAGacGgcGAUGCcgcgaaAGAGGCGg -3'
miRNA:   3'- aCCGCCuaCUC--CaaCUGCG------UCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 27301 0.67 0.785768
Target:  5'- uUGGgGGGcgugGGGGUcGAgGCGGGGGaCGg -3'
miRNA:   3'- -ACCgCCUa---CUCCAaCUgCGUCUCC-GC- -5'
29564 5' -57.1 NC_006151.1 + 27470 0.67 0.821248
Target:  5'- gGGCGGucgagcggGGGGUcGGCGgGGuGGUGg -3'
miRNA:   3'- aCCGCCua------CUCCAaCUGCgUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 27518 0.7 0.658266
Target:  5'- gGGUGcGAUGGGGgcGugGgGGGGGgGg -3'
miRNA:   3'- aCCGC-CUACUCCaaCugCgUCUCCgC- -5'
29564 5' -57.1 NC_006151.1 + 27955 0.69 0.698776
Target:  5'- gGGUGGGgaggGAGGgggGACGgGGAGGa- -3'
miRNA:   3'- aCCGCCUa---CUCCaa-CUGCgUCUCCgc -5'
29564 5' -57.1 NC_006151.1 + 29273 0.66 0.846088
Target:  5'- gGGaCGGGUGAGucggGAgGguGGGGUGg -3'
miRNA:   3'- aCC-GCCUACUCcaa-CUgCguCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 29337 0.67 0.794866
Target:  5'- cGGCGGGagagaGGGGggGGgGagaGGGGGCGg -3'
miRNA:   3'- aCCGCCUa----CUCCaaCUgCg--UCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 29376 0.7 0.627633
Target:  5'- gGGCgGGAUGGGGggagagGAgaGgAGAGGCGg -3'
miRNA:   3'- aCCG-CCUACUCCaa----CUg-CgUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 29445 0.75 0.34906
Target:  5'- cGGCGGG-GAGaGggGACGCGGAGGg- -3'
miRNA:   3'- aCCGCCUaCUC-CaaCUGCGUCUCCgc -5'
29564 5' -57.1 NC_006151.1 + 29804 0.66 0.829709
Target:  5'- aGG-GGA-GGGGUggugGugGUAGAgGGCGg -3'
miRNA:   3'- aCCgCCUaCUCCAa---CugCGUCU-CCGC- -5'
29564 5' -57.1 NC_006151.1 + 30175 0.71 0.546624
Target:  5'- gGGCGGGUGAGaGagGuCGgGGAGGCc -3'
miRNA:   3'- aCCGCCUACUC-CaaCuGCgUCUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.