miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 5' -57.1 NC_006151.1 + 1804 0.67 0.794866
Target:  5'- gGGcCGGG-GAGGcaGGCGCcggGGAGGCa -3'
miRNA:   3'- aCC-GCCUaCUCCaaCUGCG---UCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 3250 0.67 0.821248
Target:  5'- cGGCGGcgGAGcggGGCGCcGcGGCGc -3'
miRNA:   3'- aCCGCCuaCUCcaaCUGCGuCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 3743 0.7 0.63172
Target:  5'- cGGCGGcgGGGGagcUGGCGUagccggaggagccggAGAGGCc -3'
miRNA:   3'- aCCGCCuaCUCCa--ACUGCG---------------UCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 3832 0.68 0.738393
Target:  5'- cUGGCGGGgcugGAGGgcccgGAgcCGgGGAGGCc -3'
miRNA:   3'- -ACCGCCUa---CUCCaa---CU--GCgUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 4204 0.71 0.597029
Target:  5'- aGGCGGGcccGAGGgcggccggGGCGCGGgcGGGCGc -3'
miRNA:   3'- aCCGCCUa--CUCCaa------CUGCGUC--UCCGC- -5'
29564 5' -57.1 NC_006151.1 + 5052 0.7 0.627633
Target:  5'- cGGCGGAgGAGGa-GGCGgaGGAGGCc -3'
miRNA:   3'- aCCGCCUaCUCCaaCUGCg-UCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 5250 0.72 0.507297
Target:  5'- cGGCGGcgGGGGcccggGGgGCGGAgGGCGa -3'
miRNA:   3'- aCCGCCuaCUCCaa---CUgCGUCU-CCGC- -5'
29564 5' -57.1 NC_006151.1 + 8003 0.66 0.853991
Target:  5'- gGGCGGgcGGGaGggGGCGCgAGAccGGCu -3'
miRNA:   3'- aCCGCCuaCUC-CaaCUGCG-UCU--CCGc -5'
29564 5' -57.1 NC_006151.1 + 8085 0.69 0.718733
Target:  5'- gGGCGuGgcGGGGc-GugGCAGAGGgGg -3'
miRNA:   3'- aCCGC-CuaCUCCaaCugCGUCUCCgC- -5'
29564 5' -57.1 NC_006151.1 + 8473 0.68 0.738393
Target:  5'- aGGaCGGAUGGucGGUcgGACGgGGcGGGCGg -3'
miRNA:   3'- aCC-GCCUACU--CCAa-CUGCgUC-UCCGC- -5'
29564 5' -57.1 NC_006151.1 + 9624 0.67 0.794866
Target:  5'- cGGCGGcgagGGGGgaagcggGAgGgAGAGGCGc -3'
miRNA:   3'- aCCGCCua--CUCCaa-----CUgCgUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 10211 0.71 0.556613
Target:  5'- cGGCGGcugcaGAGGcggcugcgGACGCGGAGGgGg -3'
miRNA:   3'- aCCGCCua---CUCCaa------CUGCGUCUCCgC- -5'
29564 5' -57.1 NC_006151.1 + 10443 0.76 0.318997
Target:  5'- cGGCGGGgagggaggagGAGGagGACGCGGcGGCGg -3'
miRNA:   3'- aCCGCCUa---------CUCCaaCUGCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 10663 0.73 0.45074
Target:  5'- aGGCGGcgGGGGa--GCGCGGAGcGCGc -3'
miRNA:   3'- aCCGCCuaCUCCaacUGCGUCUC-CGC- -5'
29564 5' -57.1 NC_006151.1 + 11716 0.66 0.829709
Target:  5'- gGcGCGGAacgaGAGGggGGaGCGGGGGUGa -3'
miRNA:   3'- aC-CGCCUa---CUCCaaCUgCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 11807 0.74 0.406362
Target:  5'- gGGCGGGgUGGGGUggGGgGCGGcGGCGg -3'
miRNA:   3'- aCCGCCU-ACUCCAa-CUgCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 14475 0.7 0.658266
Target:  5'- gGGCGGGUGGGcGggUGG-GCGGGGGuCGg -3'
miRNA:   3'- aCCGCCUACUC-Ca-ACUgCGUCUCC-GC- -5'
29564 5' -57.1 NC_006151.1 + 16696 0.67 0.794866
Target:  5'- uUGGUGGGaagGGGGagUGACGuCAG-GGCa -3'
miRNA:   3'- -ACCGCCUa--CUCCa-ACUGC-GUCuCCGc -5'
29564 5' -57.1 NC_006151.1 + 16829 0.69 0.668446
Target:  5'- uUGGgGGGUGuGGggGAUGCGGAGa-- -3'
miRNA:   3'- -ACCgCCUACuCCaaCUGCGUCUCcgc -5'
29564 5' -57.1 NC_006151.1 + 18094 0.66 0.861693
Target:  5'- cGGCGGccG-GGUUagaGACGCucgucgggacGGGGGCGc -3'
miRNA:   3'- aCCGCCuaCuCCAA---CUGCG----------UCUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.