miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 5' -57.1 NC_006151.1 + 141698 0.69 0.668446
Target:  5'- cGGCGGcUGGcGGcgGACGCGGugcccgGGGCGu -3'
miRNA:   3'- aCCGCCuACU-CCaaCUGCGUC------UCCGC- -5'
29564 5' -57.1 NC_006151.1 + 141281 0.66 0.861693
Target:  5'- cGGCGGcUGcGGUccgaUGACGguG-GGCu -3'
miRNA:   3'- aCCGCCuACuCCA----ACUGCguCuCCGc -5'
29564 5' -57.1 NC_006151.1 + 135105 0.67 0.803818
Target:  5'- gGGCGGgcGGcGGUa-GCGCGcGGGGCGg -3'
miRNA:   3'- aCCGCCuaCU-CCAacUGCGU-CUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 134993 0.66 0.837172
Target:  5'- gGGCGGGcgcgucuUGGcGggGGCGCGGGGGgGc -3'
miRNA:   3'- aCCGCCU-------ACUcCaaCUGCGUCUCCgC- -5'
29564 5' -57.1 NC_006151.1 + 133633 0.7 0.648065
Target:  5'- cGGCGGccGGGGcgGugGUccgggugcgAGAGGCGc -3'
miRNA:   3'- aCCGCCuaCUCCaaCugCG---------UCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 133411 0.66 0.829709
Target:  5'- gGGCGGucuuGGccgcgGACGCGGGGGUc -3'
miRNA:   3'- aCCGCCuacuCCaa---CUGCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 133354 0.7 0.637851
Target:  5'- cGGCGGcgGuGGUgguggugGugGUGGuGGCGg -3'
miRNA:   3'- aCCGCCuaCuCCAa------CugCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 131717 0.78 0.258595
Target:  5'- cGGgGGAUGAGGUgguaGGCGgGGuGGCGg -3'
miRNA:   3'- aCCgCCUACUCCAa---CUGCgUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 130944 0.79 0.207866
Target:  5'- gGGCGGcgGGGGgucgcgcgGGCGCGGGGGCc -3'
miRNA:   3'- aCCGCCuaCUCCaa------CUGCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 130868 0.67 0.775602
Target:  5'- gGGCGGGaccgcagUGGGcGgcGGCgGUGGAGGCGg -3'
miRNA:   3'- aCCGCCU-------ACUC-CaaCUG-CGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 129306 0.78 0.252493
Target:  5'- cGGCGGAgcauGGcgGAgGCAGAGGCGg -3'
miRNA:   3'- aCCGCCUacu-CCaaCUgCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 128052 0.68 0.757684
Target:  5'- cGGCGGcagcgGcGGcUG-CGCGGGGGCGa -3'
miRNA:   3'- aCCGCCua---CuCCaACuGCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 127371 0.72 0.526823
Target:  5'- gGGCGGGgaccGcGGggGugGCGGGGGCc -3'
miRNA:   3'- aCCGCCUa---CuCCaaCugCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 127270 0.71 0.566655
Target:  5'- gUGGCcGGUGAGGUcgaUGACGgguCGGGGGUGc -3'
miRNA:   3'- -ACCGcCUACUCCA---ACUGC---GUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 122949 0.68 0.767168
Target:  5'- cGGCGGcgccGcGGggGGCGCGGAcgccGGCGa -3'
miRNA:   3'- aCCGCCua--CuCCaaCUGCGUCU----CCGC- -5'
29564 5' -57.1 NC_006151.1 + 122469 0.67 0.776532
Target:  5'- cGGCGGGcgccGAGGccgggGACGCGGGcgagacGGCGc -3'
miRNA:   3'- aCCGCCUa---CUCCaa---CUGCGUCU------CCGC- -5'
29564 5' -57.1 NC_006151.1 + 121654 0.67 0.812614
Target:  5'- cGGCGGAc-GGGcgGGCGgAGGGGgGg -3'
miRNA:   3'- aCCGCCUacUCCaaCUGCgUCUCCgC- -5'
29564 5' -57.1 NC_006151.1 + 120783 0.73 0.459932
Target:  5'- cUGGCGGAcGcGGccGACGCGGAGcGCGc -3'
miRNA:   3'- -ACCGCCUaCuCCaaCUGCGUCUC-CGC- -5'
29564 5' -57.1 NC_006151.1 + 118408 0.7 0.627633
Target:  5'- cGGUGGAcaacgccGAGGagacgacgGGCGCGGAGGUGu -3'
miRNA:   3'- aCCGCCUa------CUCCaa------CUGCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 115433 0.67 0.776532
Target:  5'- gGGCGGAaGAGGUcgcgcgUGAUGCGcGcGGCc -3'
miRNA:   3'- aCCGCCUaCUCCA------ACUGCGU-CuCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.