Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29564 | 5' | -57.1 | NC_006151.1 | + | 130944 | 0.79 | 0.207866 |
Target: 5'- gGGCGGcgGGGGgucgcgcgGGCGCGGGGGCc -3' miRNA: 3'- aCCGCCuaCUCCaa------CUGCGUCUCCGc -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 129306 | 0.78 | 0.252493 |
Target: 5'- cGGCGGAgcauGGcgGAgGCAGAGGCGg -3' miRNA: 3'- aCCGCCUacu-CCaaCUgCGUCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 131717 | 0.78 | 0.258595 |
Target: 5'- cGGgGGAUGAGGUgguaGGCGgGGuGGCGg -3' miRNA: 3'- aCCgCCUACUCCAa---CUGCgUCuCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 23005 | 0.77 | 0.264817 |
Target: 5'- cGcGCGGGUGGGGgcgcggggGugGUGGAGGCGg -3' miRNA: 3'- aC-CGCCUACUCCaa------CugCGUCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 46367 | 0.77 | 0.277624 |
Target: 5'- -aGUGGAUGcGGcgGAUGCAGAGGCGa -3' miRNA: 3'- acCGCCUACuCCaaCUGCGUCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 10443 | 0.76 | 0.318997 |
Target: 5'- cGGCGGGgagggaggagGAGGagGACGCGGcGGCGg -3' miRNA: 3'- aCCGCCUa---------CUCCaaCUGCGUCuCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 40537 | 0.75 | 0.34906 |
Target: 5'- cGGCGGcgGAGG-UGGCGgCGGuGGUGg -3' miRNA: 3'- aCCGCCuaCUCCaACUGC-GUCuCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 29445 | 0.75 | 0.34906 |
Target: 5'- cGGCGGG-GAGaGggGACGCGGAGGg- -3' miRNA: 3'- aCCGCCUaCUC-CaaCUGCGUCUCCgc -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 11807 | 0.74 | 0.406362 |
Target: 5'- gGGCGGGgUGGGGUggGGgGCGGcGGCGg -3' miRNA: 3'- aCCGCCU-ACUCCAa-CUgCGUCuCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 44467 | 0.74 | 0.415018 |
Target: 5'- aUGGgGGGUGAGGgugGACGgGGGGGg- -3' miRNA: 3'- -ACCgCCUACUCCaa-CUGCgUCUCCgc -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 30873 | 0.74 | 0.423786 |
Target: 5'- cGGCGGAgGAGGggGGa--AGAGGCGg -3' miRNA: 3'- aCCGCCUaCUCCaaCUgcgUCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 10663 | 0.73 | 0.45074 |
Target: 5'- aGGCGGcgGGGGa--GCGCGGAGcGCGc -3' miRNA: 3'- aCCGCCuaCUCCaacUGCGUCUC-CGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 120783 | 0.73 | 0.459932 |
Target: 5'- cUGGCGGAcGcGGccGACGCGGAGcGCGc -3' miRNA: 3'- -ACCGCCUaCuCCaaCUGCGUCUC-CGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 51033 | 0.73 | 0.478608 |
Target: 5'- gGGUgGGAUGGGGauggUGACGguGGuGGCGa -3' miRNA: 3'- aCCG-CCUACUCCa---ACUGCguCU-CCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 26274 | 0.72 | 0.507297 |
Target: 5'- gGGCaaacGAUGGGGcgGACGguGGGGUGg -3' miRNA: 3'- aCCGc---CUACUCCaaCUGCguCUCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 5250 | 0.72 | 0.507297 |
Target: 5'- cGGCGGcgGGGGcccggGGgGCGGAgGGCGa -3' miRNA: 3'- aCCGCCuaCUCCaa---CUgCGUCU-CCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 103637 | 0.72 | 0.507297 |
Target: 5'- gUGGCGGcgGcgcuGGcgGACGCGGAcacGGCGg -3' miRNA: 3'- -ACCGCCuaCu---CCaaCUGCGUCU---CCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 111352 | 0.72 | 0.517023 |
Target: 5'- gGGCGGAUGGGc---GCGCGG-GGCGa -3' miRNA: 3'- aCCGCCUACUCcaacUGCGUCuCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 72579 | 0.72 | 0.520935 |
Target: 5'- gGGCGGGUGAcagagucggggugagGGggGGgGCAG-GGCGg -3' miRNA: 3'- aCCGCCUACU---------------CCaaCUgCGUCuCCGC- -5' |
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29564 | 5' | -57.1 | NC_006151.1 | + | 45622 | 0.72 | 0.526823 |
Target: 5'- gGGCGGAaGGGGgcgugGACGCcccGGGCGa -3' miRNA: 3'- aCCGCCUaCUCCaa---CUGCGuc-UCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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