miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 5' -57.1 NC_006151.1 + 130944 0.79 0.207866
Target:  5'- gGGCGGcgGGGGgucgcgcgGGCGCGGGGGCc -3'
miRNA:   3'- aCCGCCuaCUCCaa------CUGCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 129306 0.78 0.252493
Target:  5'- cGGCGGAgcauGGcgGAgGCAGAGGCGg -3'
miRNA:   3'- aCCGCCUacu-CCaaCUgCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 131717 0.78 0.258595
Target:  5'- cGGgGGAUGAGGUgguaGGCGgGGuGGCGg -3'
miRNA:   3'- aCCgCCUACUCCAa---CUGCgUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 23005 0.77 0.264817
Target:  5'- cGcGCGGGUGGGGgcgcggggGugGUGGAGGCGg -3'
miRNA:   3'- aC-CGCCUACUCCaa------CugCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 46367 0.77 0.277624
Target:  5'- -aGUGGAUGcGGcgGAUGCAGAGGCGa -3'
miRNA:   3'- acCGCCUACuCCaaCUGCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 10443 0.76 0.318997
Target:  5'- cGGCGGGgagggaggagGAGGagGACGCGGcGGCGg -3'
miRNA:   3'- aCCGCCUa---------CUCCaaCUGCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 40537 0.75 0.34906
Target:  5'- cGGCGGcgGAGG-UGGCGgCGGuGGUGg -3'
miRNA:   3'- aCCGCCuaCUCCaACUGC-GUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 29445 0.75 0.34906
Target:  5'- cGGCGGG-GAGaGggGACGCGGAGGg- -3'
miRNA:   3'- aCCGCCUaCUC-CaaCUGCGUCUCCgc -5'
29564 5' -57.1 NC_006151.1 + 11807 0.74 0.406362
Target:  5'- gGGCGGGgUGGGGUggGGgGCGGcGGCGg -3'
miRNA:   3'- aCCGCCU-ACUCCAa-CUgCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 44467 0.74 0.415018
Target:  5'- aUGGgGGGUGAGGgugGACGgGGGGGg- -3'
miRNA:   3'- -ACCgCCUACUCCaa-CUGCgUCUCCgc -5'
29564 5' -57.1 NC_006151.1 + 30873 0.74 0.423786
Target:  5'- cGGCGGAgGAGGggGGa--AGAGGCGg -3'
miRNA:   3'- aCCGCCUaCUCCaaCUgcgUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 10663 0.73 0.45074
Target:  5'- aGGCGGcgGGGGa--GCGCGGAGcGCGc -3'
miRNA:   3'- aCCGCCuaCUCCaacUGCGUCUC-CGC- -5'
29564 5' -57.1 NC_006151.1 + 120783 0.73 0.459932
Target:  5'- cUGGCGGAcGcGGccGACGCGGAGcGCGc -3'
miRNA:   3'- -ACCGCCUaCuCCaaCUGCGUCUC-CGC- -5'
29564 5' -57.1 NC_006151.1 + 51033 0.73 0.478608
Target:  5'- gGGUgGGAUGGGGauggUGACGguGGuGGCGa -3'
miRNA:   3'- aCCG-CCUACUCCa---ACUGCguCU-CCGC- -5'
29564 5' -57.1 NC_006151.1 + 26274 0.72 0.507297
Target:  5'- gGGCaaacGAUGGGGcgGACGguGGGGUGg -3'
miRNA:   3'- aCCGc---CUACUCCaaCUGCguCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 5250 0.72 0.507297
Target:  5'- cGGCGGcgGGGGcccggGGgGCGGAgGGCGa -3'
miRNA:   3'- aCCGCCuaCUCCaa---CUgCGUCU-CCGC- -5'
29564 5' -57.1 NC_006151.1 + 103637 0.72 0.507297
Target:  5'- gUGGCGGcgGcgcuGGcgGACGCGGAcacGGCGg -3'
miRNA:   3'- -ACCGCCuaCu---CCaaCUGCGUCU---CCGC- -5'
29564 5' -57.1 NC_006151.1 + 111352 0.72 0.517023
Target:  5'- gGGCGGAUGGGc---GCGCGG-GGCGa -3'
miRNA:   3'- aCCGCCUACUCcaacUGCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 72579 0.72 0.520935
Target:  5'- gGGCGGGUGAcagagucggggugagGGggGGgGCAG-GGCGg -3'
miRNA:   3'- aCCGCCUACU---------------CCaaCUgCGUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 45622 0.72 0.526823
Target:  5'- gGGCGGAaGGGGgcgugGACGCcccGGGCGa -3'
miRNA:   3'- aCCGCCUaCUCCaa---CUGCGuc-UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.