miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 5' -57.1 NC_006151.1 + 130944 0.79 0.207866
Target:  5'- gGGCGGcgGGGGgucgcgcgGGCGCGGGGGCc -3'
miRNA:   3'- aCCGCCuaCUCCaa------CUGCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 44049 0.66 0.837992
Target:  5'- -aGUGGAUGAGGgacaggggGACGguGGuGCGg -3'
miRNA:   3'- acCGCCUACUCCaa------CUGCguCUcCGC- -5'
29564 5' -57.1 NC_006151.1 + 134993 0.66 0.837172
Target:  5'- gGGCGGGcgcgucuUGGcGggGGCGCGGGGGgGc -3'
miRNA:   3'- aCCGCCU-------ACUcCaaCUGCGUCUCCgC- -5'
29564 5' -57.1 NC_006151.1 + 133411 0.66 0.829709
Target:  5'- gGGCGGucuuGGccgcgGACGCGGGGGUc -3'
miRNA:   3'- aCCGCCuacuCCaa---CUGCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 29804 0.66 0.829709
Target:  5'- aGG-GGA-GGGGUggugGugGUAGAgGGCGg -3'
miRNA:   3'- aCCgCCUaCUCCAa---CugCGUCU-CCGC- -5'
29564 5' -57.1 NC_006151.1 + 11716 0.66 0.829709
Target:  5'- gGcGCGGAacgaGAGGggGGaGCGGGGGUGa -3'
miRNA:   3'- aC-CGCCUa---CUCCaaCUgCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 27470 0.67 0.821248
Target:  5'- gGGCGGucgagcggGGGGUcGGCGgGGuGGUGg -3'
miRNA:   3'- aCCGCCua------CUCCAaCUGCgUCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 3250 0.67 0.821248
Target:  5'- cGGCGGcgGAGcggGGCGCcGcGGCGc -3'
miRNA:   3'- aCCGCCuaCUCcaaCUGCGuCuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 20455 0.67 0.820392
Target:  5'- gGGCucggGGGUGgcgccggucccccGGGggGGCGCGGGGGUc -3'
miRNA:   3'- aCCG----CCUAC-------------UCCaaCUGCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 44493 0.66 0.837992
Target:  5'- gUGGgGGAUGguguGGGgUGGCGguGGGGa- -3'
miRNA:   3'- -ACCgCCUAC----UCCaACUGCguCUCCgc -5'
29564 5' -57.1 NC_006151.1 + 27122 0.66 0.837992
Target:  5'- cGGCGGccGAGacGgcGAUGCcgcgaaAGAGGCGg -3'
miRNA:   3'- aCCGCCuaCUC--CaaCUGCG------UCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 29273 0.66 0.846088
Target:  5'- gGGaCGGGUGAGucggGAgGguGGGGUGg -3'
miRNA:   3'- aCC-GCCUACUCcaa-CUgCguCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 141281 0.66 0.861693
Target:  5'- cGGCGGcUGcGGUccgaUGACGguG-GGCu -3'
miRNA:   3'- aCCGCCuACuCCA----ACUGCguCuCCGc -5'
29564 5' -57.1 NC_006151.1 + 115003 0.66 0.861693
Target:  5'- gUGGCGcAUGGccagcuuguGGUaGACGguGAGGUGc -3'
miRNA:   3'- -ACCGCcUACU---------CCAaCUGCguCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 94207 0.66 0.853991
Target:  5'- cGGCGGA-GAGGaaGGCGaAGAGGa- -3'
miRNA:   3'- aCCGCCUaCUCCaaCUGCgUCUCCgc -5'
29564 5' -57.1 NC_006151.1 + 44199 0.66 0.853991
Target:  5'- gGGCGGcgGcGGgaGAUGguGAuGGUGg -3'
miRNA:   3'- aCCGCCuaCuCCaaCUGCguCU-CCGC- -5'
29564 5' -57.1 NC_006151.1 + 8003 0.66 0.853991
Target:  5'- gGGCGGgcGGGaGggGGCGCgAGAccGGCu -3'
miRNA:   3'- aCCGCCuaCUC-CaaCUGCG-UCU--CCGc -5'
29564 5' -57.1 NC_006151.1 + 90724 0.66 0.846088
Target:  5'- aGGCGGcgGcgacGGUggcggcGGCGCccucGGGGGCGg -3'
miRNA:   3'- aCCGCCuaCu---CCAa-----CUGCG----UCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 71561 0.66 0.846088
Target:  5'- gGGgGGgcGAGGggGACGgGcGGGCa -3'
miRNA:   3'- aCCgCCuaCUCCaaCUGCgUcUCCGc -5'
29564 5' -57.1 NC_006151.1 + 49744 0.66 0.846088
Target:  5'- aGaCGGA-GAGGggGACGUGGAagacGGCGa -3'
miRNA:   3'- aCcGCCUaCUCCaaCUGCGUCU----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.