miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 72031 0.68 0.646916
Target:  5'- cCCCGCGCggg----CGCCCCGCCGCGc -3'
miRNA:   3'- -GGGUGUGagagaggGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 32621 0.68 0.646916
Target:  5'- gCCGCGC-CUCUCCCuCCCgcuuccccccuCGCCGCc -3'
miRNA:   3'- gGGUGUGaGAGAGGGcGGG-----------GUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 85682 0.68 0.646916
Target:  5'- aCCUGCGCUUcCUgCUGgCCCACUACGu -3'
miRNA:   3'- -GGGUGUGAGaGAgGGCgGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 56808 0.68 0.646916
Target:  5'- cCCCucuCUCgCUCCC-CCCCgACCGCGg -3'
miRNA:   3'- -GGGuguGAGaGAGGGcGGGG-UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 112225 0.68 0.636961
Target:  5'- gUCGCGCUCgCUCgUCGCCgCCGCCAg- -3'
miRNA:   3'- gGGUGUGAGaGAG-GGCGG-GGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 8293 0.68 0.636961
Target:  5'- cCCCGCGCgggCgccgCgUCCCGCCCCgaGCCc-- -3'
miRNA:   3'- -GGGUGUGa--Ga---G-AGGGCGGGG--UGGugu -5'
29567 3' -59.9 NC_006151.1 + 30539 0.68 0.636961
Target:  5'- cCCCGCucccccCUCUCgUUCCGCgCCGCaCGCGc -3'
miRNA:   3'- -GGGUGu-----GAGAG-AGGGCGgGGUG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 109820 0.68 0.636961
Target:  5'- cCCCGCGCUC---CCCGCuggcggaccCCCACCAg- -3'
miRNA:   3'- -GGGUGUGAGagaGGGCG---------GGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 71446 0.68 0.635965
Target:  5'- aCCCGCcccccCUC-CUCCCucgcuccGCCUCGCCACc -3'
miRNA:   3'- -GGGUGu----GAGaGAGGG-------CGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 107574 0.68 0.627002
Target:  5'- gCCCGCggaGCUgaCUCCCgccgccaagcugGCCCCGCCGg- -3'
miRNA:   3'- -GGGUG---UGAgaGAGGG------------CGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 34110 0.68 0.627002
Target:  5'- cCCCGCcC-CUUUgcaCCCGCCCCcCCACc -3'
miRNA:   3'- -GGGUGuGaGAGA---GGGCGGGGuGGUGu -5'
29567 3' -59.9 NC_006151.1 + 10602 0.68 0.617048
Target:  5'- cUCCGCcCUC-CUCCCuCCCCGCgCGCc -3'
miRNA:   3'- -GGGUGuGAGaGAGGGcGGGGUG-GUGu -5'
29567 3' -59.9 NC_006151.1 + 123361 0.68 0.617048
Target:  5'- gCCGCGCUCcUUCCgGCCgUCACgCGCAa -3'
miRNA:   3'- gGGUGUGAGaGAGGgCGG-GGUG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 77200 0.68 0.617048
Target:  5'- gCCGCGucCUCcaUC-CCCGCgCCGCCGCGu -3'
miRNA:   3'- gGGUGU--GAG--AGaGGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 67687 0.68 0.607104
Target:  5'- gCUCGCGCgcagCUCCCGCUuguCCGCCugGc -3'
miRNA:   3'- -GGGUGUGaga-GAGGGCGG---GGUGGugU- -5'
29567 3' -59.9 NC_006151.1 + 31598 0.68 0.597177
Target:  5'- cUCCGCGCUC-C-CCCGCCgCCugggcggggauGCCGCGc -3'
miRNA:   3'- -GGGUGUGAGaGaGGGCGG-GG-----------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 28141 0.68 0.597177
Target:  5'- cUCCGCGC-CUCUCCCGgucgauCCCCGuCgGCGu -3'
miRNA:   3'- -GGGUGUGaGAGAGGGC------GGGGU-GgUGU- -5'
29567 3' -59.9 NC_006151.1 + 11367 0.68 0.594204
Target:  5'- aCCgCGCGCUCcgCUCgCCGCCucuuccccccuccuCCGCCGCc -3'
miRNA:   3'- -GG-GUGUGAGa-GAG-GGCGG--------------GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 142650 0.69 0.590243
Target:  5'- cCCCACcgagagccgggcccaGCUCUCcCCCGggcccccCCCCcCCACAa -3'
miRNA:   3'- -GGGUG---------------UGAGAGaGGGC-------GGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 142941 0.69 0.587276
Target:  5'- aCCACACgcgCgCCCGCCCuCGCC-CAu -3'
miRNA:   3'- gGGUGUGagaGaGGGCGGG-GUGGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.