miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 132903 0.66 0.722608
Target:  5'- aCCaCGCACUC-CUCgucgcgcauccucaCCGaCCCCcCCACAa -3'
miRNA:   3'- -GG-GUGUGAGaGAG--------------GGC-GGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 39635 0.66 0.71585
Target:  5'- aCCCGCGC-CgggCcccggaccccggUCCCGCUgCCGCCGCGc -3'
miRNA:   3'- -GGGUGUGaGa--G------------AGGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 66747 0.67 0.706139
Target:  5'- gCgGCGCUC-CUUCCGCgaCGCCGCGa -3'
miRNA:   3'- gGgUGUGAGaGAGGGCGggGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 50676 0.67 0.706139
Target:  5'- gCCGCACc----CCCGCgCCGCCGCGg -3'
miRNA:   3'- gGGUGUGagagaGGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 88716 0.67 0.696368
Target:  5'- gCCCuCGgUCUCggcgUCCGCCgCgGCCACGc -3'
miRNA:   3'- -GGGuGUgAGAGa---GGGCGG-GgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 109502 0.67 0.696368
Target:  5'- uUCACAC-CUC-CgCCGCUgCCGCCGCAg -3'
miRNA:   3'- gGGUGUGaGAGaG-GGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 38018 0.67 0.686547
Target:  5'- gCCCugccCGCUCcggCUgCCCGCgCCCGcCCGCGc -3'
miRNA:   3'- -GGGu---GUGAGa--GA-GGGCG-GGGU-GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 33735 0.67 0.686547
Target:  5'- aUCACACUCUC-CCCGCgCaCAgaCACAc -3'
miRNA:   3'- gGGUGUGAGAGaGGGCGgG-GUg-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 44868 0.67 0.686547
Target:  5'- --gGCGCcCUCUCUCGCCCgACCuCGg -3'
miRNA:   3'- gggUGUGaGAGAGGGCGGGgUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 126193 0.67 0.686547
Target:  5'- aCCgGCACa-UCUCgCGCCUgCGCCGCAa -3'
miRNA:   3'- -GGgUGUGagAGAGgGCGGG-GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 29906 0.67 0.676683
Target:  5'- uCCCGCuCgcgCUC-CCCGCCCCuCCu-- -3'
miRNA:   3'- -GGGUGuGa--GAGaGGGCGGGGuGGugu -5'
29567 3' -59.9 NC_006151.1 + 15255 0.67 0.666785
Target:  5'- cCCUGCuccaGCUCUCgCCCgagcagagcGCCCCGCUGCGc -3'
miRNA:   3'- -GGGUG----UGAGAGaGGG---------CGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 35864 0.67 0.666785
Target:  5'- cUCCGCGCUCggcgCCCgGCCUCGCUcagGCAg -3'
miRNA:   3'- -GGGUGUGAGaga-GGG-CGGGGUGG---UGU- -5'
29567 3' -59.9 NC_006151.1 + 67975 0.67 0.666785
Target:  5'- aCCACGCagUCgcggcggCCCGCCggCGCCGCGg -3'
miRNA:   3'- gGGUGUGagAGa------GGGCGGg-GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 89922 0.67 0.666785
Target:  5'- cUCCACGCUgUagCCgCGCCCCAgguCCGCGg -3'
miRNA:   3'- -GGGUGUGAgAgaGG-GCGGGGU---GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 131622 0.67 0.666785
Target:  5'- gCCCGCGg-CUUUauaCGCCCCACCcACAg -3'
miRNA:   3'- -GGGUGUgaGAGAgg-GCGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 36989 0.67 0.663809
Target:  5'- cCCCGgccCGCUCgccCUccgccccccgggccCCCGCCgCCGCCGCGc -3'
miRNA:   3'- -GGGU---GUGAGa--GA--------------GGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 130545 0.67 0.656859
Target:  5'- cCCCGCGCgagggcggCgcgCUgCCGCCCCACgAg- -3'
miRNA:   3'- -GGGUGUGa-------Ga--GAgGGCGGGGUGgUgu -5'
29567 3' -59.9 NC_006151.1 + 38094 0.67 0.656859
Target:  5'- gCCGCGCUg-CUCgCGCUCCGCgACGc -3'
miRNA:   3'- gGGUGUGAgaGAGgGCGGGGUGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 15333 0.67 0.656859
Target:  5'- aCCCGCGCgucCUCUCCCcGCCggUCAUCGa- -3'
miRNA:   3'- -GGGUGUGa--GAGAGGG-CGG--GGUGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.