miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 12957 0.77 0.190047
Target:  5'- gCCCACACUCacUUUCUCGCuCCCACCcCAc -3'
miRNA:   3'- -GGGUGUGAG--AGAGGGCG-GGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 13470 0.66 0.753932
Target:  5'- uCCCGCGggC-CggaCCGCCCCGCCGa- -3'
miRNA:   3'- -GGGUGUgaGaGag-GGCGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 14794 0.72 0.394218
Target:  5'- cCCCcCGCUCgaccgCCCGCCCCcgacccACCGCGu -3'
miRNA:   3'- -GGGuGUGAGaga--GGGCGGGG------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 15255 0.67 0.666785
Target:  5'- cCCUGCuccaGCUCUCgCCCgagcagagcGCCCCGCUGCGc -3'
miRNA:   3'- -GGGUG----UGAGAGaGGG---------CGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 15333 0.67 0.656859
Target:  5'- aCCCGCGCgucCUCUCCCcGCCggUCAUCGa- -3'
miRNA:   3'- -GGGUGUGa--GAGAGGG-CGG--GGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 15946 0.71 0.445469
Target:  5'- cCCCGCGCuguUCUUUCCUcCCCCACCc-- -3'
miRNA:   3'- -GGGUGUG---AGAGAGGGcGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 17762 0.66 0.743599
Target:  5'- gCCCACaaccacguggcucGCUCUCcuccgCCCGCUUCGCCc-- -3'
miRNA:   3'- -GGGUG-------------UGAGAGa----GGGCGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 25662 0.71 0.445469
Target:  5'- cCCCGgACUCccccggaCUCCCcCCCCACCaACAa -3'
miRNA:   3'- -GGGUgUGAGa------GAGGGcGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 27987 0.71 0.463364
Target:  5'- gCCACGCcCaCUCCCGgCCCACCcCGa -3'
miRNA:   3'- gGGUGUGaGaGAGGGCgGGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 28141 0.68 0.597177
Target:  5'- cUCCGCGC-CUCUCCCGgucgauCCCCGuCgGCGu -3'
miRNA:   3'- -GGGUGUGaGAGAGGGC------GGGGU-GgUGU- -5'
29567 3' -59.9 NC_006151.1 + 29906 0.67 0.676683
Target:  5'- uCCCGCuCgcgCUC-CCCGCCCCuCCu-- -3'
miRNA:   3'- -GGGUGuGa--GAGaGGGCGGGGuGGugu -5'
29567 3' -59.9 NC_006151.1 + 30480 0.71 0.436667
Target:  5'- gCCCACGCgccCUCUCCC-CCCUucGCgCACGc -3'
miRNA:   3'- -GGGUGUGa--GAGAGGGcGGGG--UG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 30539 0.68 0.636961
Target:  5'- cCCCGCucccccCUCUCgUUCCGCgCCGCaCGCGc -3'
miRNA:   3'- -GGGUGu-----GAGAG-AGGGCGgGGUG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 31598 0.68 0.597177
Target:  5'- cUCCGCGCUC-C-CCCGCCgCCugggcggggauGCCGCGc -3'
miRNA:   3'- -GGGUGUGAGaGaGGGCGG-GG-----------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 31808 0.66 0.76322
Target:  5'- gCCGCGuccuccucCUC-CUCCCuCCCCGCCGg- -3'
miRNA:   3'- gGGUGU--------GAGaGAGGGcGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 32200 0.7 0.485324
Target:  5'- uCCCGgACUCgggagccgCUCCCGCuCCCccguuuuuccuccugGCCGCGg -3'
miRNA:   3'- -GGGUgUGAGa-------GAGGGCG-GGG---------------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 32621 0.68 0.646916
Target:  5'- gCCGCGC-CUCUCCCuCCCgcuuccccccuCGCCGCc -3'
miRNA:   3'- gGGUGUGaGAGAGGGcGGG-----------GUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 32758 0.76 0.230294
Target:  5'- cCCCACACgccccgCUCUCCCacGCCgCgGCCGCGg -3'
miRNA:   3'- -GGGUGUGa-----GAGAGGG--CGG-GgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 33706 0.77 0.209338
Target:  5'- aCgCACGCUCUCUCUCGCacaCCCcCCACAu -3'
miRNA:   3'- -GgGUGUGAGAGAGGGCG---GGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 33735 0.67 0.686547
Target:  5'- aUCACACUCUC-CCCGCgCaCAgaCACAc -3'
miRNA:   3'- gGGUGUGAGAGaGGGCGgG-GUg-GUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.