miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 888 0.7 0.481629
Target:  5'- uCCCAcCGC-CUUUCCCuCCCCuCCACGa -3'
miRNA:   3'- -GGGU-GUGaGAGAGGGcGGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 7074 0.66 0.744543
Target:  5'- uCCCGCGCgcCUCUgauuugcaugCCCGgCCCGCUcuGCGg -3'
miRNA:   3'- -GGGUGUGa-GAGA----------GGGCgGGGUGG--UGU- -5'
29567 3' -59.9 NC_006151.1 + 7654 0.66 0.76322
Target:  5'- cCUCGCGCUCggcgcgcgCUCCgagggCGCCCCAgCCGg- -3'
miRNA:   3'- -GGGUGUGAGa-------GAGG-----GCGGGGU-GGUgu -5'
29567 3' -59.9 NC_006151.1 + 7874 0.7 0.481629
Target:  5'- cCCCACcccucuaucuCUCUCUCCCGguccCCCCucCCACc -3'
miRNA:   3'- -GGGUGu---------GAGAGAGGGC----GGGGu-GGUGu -5'
29567 3' -59.9 NC_006151.1 + 8293 0.68 0.636961
Target:  5'- cCCCGCGCgggCgccgCgUCCCGCCCCgaGCCc-- -3'
miRNA:   3'- -GGGUGUGa--Ga---G-AGGGCGGGG--UGGugu -5'
29567 3' -59.9 NC_006151.1 + 9022 0.66 0.76322
Target:  5'- cCCCGgACcCcCUCCCG-CCCGCCGgGg -3'
miRNA:   3'- -GGGUgUGaGaGAGGGCgGGGUGGUgU- -5'
29567 3' -59.9 NC_006151.1 + 9085 0.71 0.472452
Target:  5'- cCCCACACcucccuucCUC-CCCGCCCCcgacCCGCc -3'
miRNA:   3'- -GGGUGUGa-------GAGaGGGCGGGGu---GGUGu -5'
29567 3' -59.9 NC_006151.1 + 9154 0.7 0.490892
Target:  5'- gCCCAgACcuucCUCUCCCcCCuCCACCGCc -3'
miRNA:   3'- -GGGUgUGa---GAGAGGGcGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 9289 0.7 0.532563
Target:  5'- uCUCGCGCUCUC-CCCGUCgCgggaaaaaaacacggCACCACAg -3'
miRNA:   3'- -GGGUGUGAGAGaGGGCGG-G---------------GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 9662 0.7 0.518201
Target:  5'- cCCCGCGCUUcccCUucccgcuucccccUCCGCCCgGCCGCGg -3'
miRNA:   3'- -GGGUGUGAGa--GA-------------GGGCGGGgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 10129 0.73 0.370064
Target:  5'- cCCCuCGCUCUCUcucccCCCGUCCCccucuCCGCGu -3'
miRNA:   3'- -GGGuGUGAGAGA-----GGGCGGGGu----GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 10526 0.7 0.481629
Target:  5'- cCCgGCGCgggcgcCUCUCCaCGCCCCGuuCCGCc -3'
miRNA:   3'- -GGgUGUGa-----GAGAGG-GCGGGGU--GGUGu -5'
29567 3' -59.9 NC_006151.1 + 10602 0.68 0.617048
Target:  5'- cUCCGCcCUC-CUCCCuCCCCGCgCGCc -3'
miRNA:   3'- -GGGUGuGAGaGAGGGcGGGGUG-GUGu -5'
29567 3' -59.9 NC_006151.1 + 11299 0.73 0.370064
Target:  5'- cCCCGCcCgCUCUCCCGggCCGCCGCGa -3'
miRNA:   3'- -GGGUGuGaGAGAGGGCggGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 11367 0.68 0.594204
Target:  5'- aCCgCGCGCUCcgCUCgCCGCCucuuccccccuccuCCGCCGCc -3'
miRNA:   3'- -GG-GUGUGAGa-GAG-GGCGG--------------GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 11437 0.69 0.557779
Target:  5'- gCCCACgcaACUC-CUCCCGCCCgCgugcccccgggGCCAUc -3'
miRNA:   3'- -GGGUG---UGAGaGAGGGCGGG-G-----------UGGUGu -5'
29567 3' -59.9 NC_006151.1 + 12084 0.73 0.332111
Target:  5'- cCCCgAC-CUCUCUcaCCCGCCCUcCCGCGc -3'
miRNA:   3'- -GGG-UGuGAGAGA--GGGCGGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 12642 0.71 0.427966
Target:  5'- cCCC-CACUC-CUCCCacaccagcCCCCGCCGCc -3'
miRNA:   3'- -GGGuGUGAGaGAGGGc-------GGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 12814 0.69 0.556802
Target:  5'- cUCCGCGucccCUCUC-CCCGCCgCCccccgcgGCCACAc -3'
miRNA:   3'- -GGGUGU----GAGAGaGGGCGG-GG-------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 12871 0.7 0.490892
Target:  5'- uCCCGCcucucCUCUCcucuccccccaUCCCGCCCCGCUc-- -3'
miRNA:   3'- -GGGUGu----GAGAG-----------AGGGCGGGGUGGugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.