miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 142941 0.69 0.587276
Target:  5'- aCCACACgcgCgCCCGCCCuCGCC-CAu -3'
miRNA:   3'- gGGUGUGagaGaGGGCGGG-GUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 142754 0.73 0.354533
Target:  5'- gCCCA-GCUCUCcCCCggGCCCCcCCACAa -3'
miRNA:   3'- -GGGUgUGAGAGaGGG--CGGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 142650 0.69 0.590243
Target:  5'- cCCCACcgagagccgggcccaGCUCUCcCCCGggcccccCCCCcCCACAa -3'
miRNA:   3'- -GGGUG---------------UGAGAGaGGGC-------GGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 141839 0.66 0.73506
Target:  5'- uCCCGCGCUCgacgcgaggggCUCgCGCCgCGCCc-- -3'
miRNA:   3'- -GGGUGUGAGa----------GAGgGCGGgGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 139878 0.7 0.489962
Target:  5'- gCgGCACgacCUCUCCCGCCCCguguucaACgACGg -3'
miRNA:   3'- gGgUGUGa--GAGAGGGCGGGG-------UGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 132903 0.66 0.722608
Target:  5'- aCCaCGCACUC-CUCgucgcgcauccucaCCGaCCCCcCCACAa -3'
miRNA:   3'- -GG-GUGUGAGaGAG--------------GGC-GGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 131622 0.67 0.666785
Target:  5'- gCCCGCGg-CUUUauaCGCCCCACCcACAg -3'
miRNA:   3'- -GGGUGUgaGAGAgg-GCGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 130545 0.67 0.656859
Target:  5'- cCCCGCGCgagggcggCgcgCUgCCGCCCCACgAg- -3'
miRNA:   3'- -GGGUGUGa-------Ga--GAgGGCGGGGUGgUgu -5'
29567 3' -59.9 NC_006151.1 + 130325 0.66 0.76322
Target:  5'- gCCgCGCGCUCggggagCUCgCGCgCCGCgGCGu -3'
miRNA:   3'- -GG-GUGUGAGa-----GAGgGCGgGGUGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 126193 0.67 0.686547
Target:  5'- aCCgGCACa-UCUCgCGCCUgCGCCGCAa -3'
miRNA:   3'- -GGgUGUGagAGAGgGCGGG-GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 123361 0.68 0.617048
Target:  5'- gCCGCGCUCcUUCCgGCCgUCACgCGCAa -3'
miRNA:   3'- gGGUGUGAGaGAGGgCGG-GGUG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 119509 0.7 0.528719
Target:  5'- cCCCugcuCGCUCUgcgaccgcgcCUCgCGCCCCGCCuGCGc -3'
miRNA:   3'- -GGGu---GUGAGA----------GAGgGCGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 118693 0.7 0.519154
Target:  5'- aCCCGCGCcccuUCUUcaacggCCCGCUCUGCCGCc -3'
miRNA:   3'- -GGGUGUG----AGAGa-----GGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 117969 0.77 0.204362
Target:  5'- gCCGCGCcuucUCUCUCCCGCUCCcgucucgucucGCCGCGu -3'
miRNA:   3'- gGGUGUG----AGAGAGGGCGGGG-----------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 117899 0.72 0.419369
Target:  5'- cUCCGC-CUCUCUCUUcaCCCCGCCGCc -3'
miRNA:   3'- -GGGUGuGAGAGAGGGc-GGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 117009 0.71 0.472452
Target:  5'- aCCACGCgCUCcCCCGCgggCCCggGCCGCAg -3'
miRNA:   3'- gGGUGUGaGAGaGGGCG---GGG--UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 112225 0.68 0.636961
Target:  5'- gUCGCGCUCgCUCgUCGCCgCCGCCAg- -3'
miRNA:   3'- gGGUGUGAGaGAG-GGCGG-GGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 109876 0.74 0.317752
Target:  5'- aCgGCGCUCguccCUCCCGCCCauccucCGCCGCGg -3'
miRNA:   3'- gGgUGUGAGa---GAGGGCGGG------GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 109820 0.68 0.636961
Target:  5'- cCCCGCGCUC---CCCGCuggcggaccCCCACCAg- -3'
miRNA:   3'- -GGGUGUGAGagaGGGCG---------GGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 109594 0.72 0.419369
Target:  5'- gCCCGCGCUCUUcacCCCGCcgccgucggaCCCGCCGg- -3'
miRNA:   3'- -GGGUGUGAGAGa--GGGCG----------GGGUGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.