miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 109367 0.79 0.160034
Target:  5'- gCCAcCAC-CUCUUCCGCCCCcGCCGCAc -3'
miRNA:   3'- gGGU-GUGaGAGAGGGCGGGG-UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 12957 0.77 0.190047
Target:  5'- gCCCACACUCacUUUCUCGCuCCCACCcCAc -3'
miRNA:   3'- -GGGUGUGAG--AGAGGGCG-GGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 117969 0.77 0.204362
Target:  5'- gCCGCGCcuucUCUCUCCCGCUCCcgucucgucucGCCGCGu -3'
miRNA:   3'- gGGUGUG----AGAGAGGGCGGGG-----------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 33706 0.77 0.209338
Target:  5'- aCgCACGCUCUCUCUCGCacaCCCcCCACAu -3'
miRNA:   3'- -GgGUGUGAGAGAGGGCG---GGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 32758 0.76 0.230294
Target:  5'- cCCCACACgccccgCUCUCCCacGCCgCgGCCGCGg -3'
miRNA:   3'- -GGGUGUGa-----GAGAGGG--CGG-GgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 101869 0.75 0.2775
Target:  5'- -gCGCAC-CgCUCCCGCCgCCGCCGCGg -3'
miRNA:   3'- ggGUGUGaGaGAGGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 93321 0.74 0.310749
Target:  5'- cCCCAuccCACUCUCccauccccguUCCCGUCCCACCc-- -3'
miRNA:   3'- -GGGU---GUGAGAG----------AGGGCGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 109876 0.74 0.317752
Target:  5'- aCgGCGCUCguccCUCCCGCCCauccucCGCCGCGg -3'
miRNA:   3'- gGgUGUGAGa---GAGGGCGGG------GUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 34146 0.74 0.317752
Target:  5'- gUCCGCGCUCcgaccccccccCUCCCccucugccacGCCCCGCCACGc -3'
miRNA:   3'- -GGGUGUGAGa----------GAGGG----------CGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 61416 0.74 0.324873
Target:  5'- cCCCGCcgUC-CUCCUcgGCCCCGCCGCGg -3'
miRNA:   3'- -GGGUGugAGaGAGGG--CGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 62798 0.74 0.324873
Target:  5'- cCCCACgGCUCUCUuccCCCGUCCUcgGCCAUc -3'
miRNA:   3'- -GGGUG-UGAGAGA---GGGCGGGG--UGGUGu -5'
29567 3' -59.9 NC_006151.1 + 60654 0.73 0.332111
Target:  5'- gCCCGCGCcgCguccucgCUCCCGUCgCCGCCGCc -3'
miRNA:   3'- -GGGUGUGa-Ga------GAGGGCGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 12084 0.73 0.332111
Target:  5'- cCCCgAC-CUCUCUcaCCCGCCCUcCCGCGc -3'
miRNA:   3'- -GGG-UGuGAGAGA--GGGCGGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 108323 0.73 0.339468
Target:  5'- cCCCGCGCcCgggCCCGCCCCAUCGg- -3'
miRNA:   3'- -GGGUGUGaGagaGGGCGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 49327 0.73 0.346942
Target:  5'- gCCCACGCUCaaaaggcCUgcgcgccggaCCCGCgCCGCCACAa -3'
miRNA:   3'- -GGGUGUGAGa------GA----------GGGCGgGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 142754 0.73 0.354533
Target:  5'- gCCCA-GCUCUCcCCCggGCCCCcCCACAa -3'
miRNA:   3'- -GGGUgUGAGAGaGGG--CGGGGuGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 108264 0.73 0.370064
Target:  5'- aCUACGCUCcCcaggCCCGCCCCuCCACc -3'
miRNA:   3'- gGGUGUGAGaGa---GGGCGGGGuGGUGu -5'
29567 3' -59.9 NC_006151.1 + 10129 0.73 0.370064
Target:  5'- cCCCuCGCUCUCUcucccCCCGUCCCccucuCCGCGu -3'
miRNA:   3'- -GGGuGUGAGAGA-----GGGCGGGGu----GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 11299 0.73 0.370064
Target:  5'- cCCCGCcCgCUCUCCCGggCCGCCGCGa -3'
miRNA:   3'- -GGGUGuGaGAGAGGGCggGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 109207 0.72 0.386054
Target:  5'- gCCgGC-CUCgccagagaCUCCCGCCCCGgCGCAg -3'
miRNA:   3'- -GGgUGuGAGa-------GAGGGCGGGGUgGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.