miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 37147 0.72 0.393396
Target:  5'- gCCCGCGCcgggccgccaccgUCUCcgCCgGCgCCCGCCGCGg -3'
miRNA:   3'- -GGGUGUG-------------AGAGa-GGgCG-GGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 40278 0.72 0.394218
Target:  5'- aCUCugACUCugacUCUCCgGCCCCuCCACc -3'
miRNA:   3'- -GGGugUGAG----AGAGGgCGGGGuGGUGu -5'
29567 3' -59.9 NC_006151.1 + 62693 0.72 0.394218
Target:  5'- gCCC-CugUCcCuuguccccggUCCCGCCCCGCCGCc -3'
miRNA:   3'- -GGGuGugAGaG----------AGGGCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 14794 0.72 0.394218
Target:  5'- cCCCcCGCUCgaccgCCCGCCCCcgacccACCGCGu -3'
miRNA:   3'- -GGGuGUGAGaga--GGGCGGGG------UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 91794 0.72 0.410877
Target:  5'- gCCCggcuuauauGCGCgggaugC-CCCGCCCCGCCACAu -3'
miRNA:   3'- -GGG---------UGUGaga---GaGGGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 50823 0.72 0.410877
Target:  5'- gUCCACGC-CUCggCCCGCgCCGCCGu- -3'
miRNA:   3'- -GGGUGUGaGAGa-GGGCGgGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 117899 0.72 0.419369
Target:  5'- cUCCGC-CUCUCUCUUcaCCCCGCCGCc -3'
miRNA:   3'- -GGGUGuGAGAGAGGGc-GGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 109594 0.72 0.419369
Target:  5'- gCCCGCGCUCUUcacCCCGCcgccgucggaCCCGCCGg- -3'
miRNA:   3'- -GGGUGUGAGAGa--GGGCG----------GGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 12642 0.71 0.427966
Target:  5'- cCCC-CACUC-CUCCCacaccagcCCCCGCCGCc -3'
miRNA:   3'- -GGGuGUGAGaGAGGGc-------GGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 86070 0.71 0.436667
Target:  5'- gCCCGCAgUCUCcgcgcgcgCgCCGCCgCCGCCAUg -3'
miRNA:   3'- -GGGUGUgAGAGa-------G-GGCGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 30480 0.71 0.436667
Target:  5'- gCCCACGCgccCUCUCCC-CCCUucGCgCACGc -3'
miRNA:   3'- -GGGUGUGa--GAGAGGGcGGGG--UG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 15946 0.71 0.445469
Target:  5'- cCCCGCGCuguUCUUUCCUcCCCCACCc-- -3'
miRNA:   3'- -GGGUGUG---AGAGAGGGcGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 25662 0.71 0.445469
Target:  5'- cCCCGgACUCccccggaCUCCCcCCCCACCaACAa -3'
miRNA:   3'- -GGGUgUGAGa------GAGGGcGGGGUGG-UGU- -5'
29567 3' -59.9 NC_006151.1 + 108210 0.71 0.445469
Target:  5'- aCUACGCUCcCcaggCCCGCCgCACCGCc -3'
miRNA:   3'- gGGUGUGAGaGa---GGGCGGgGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 27987 0.71 0.463364
Target:  5'- gCCACGCcCaCUCCCGgCCCACCcCGa -3'
miRNA:   3'- gGGUGUGaGaGAGGGCgGGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 9085 0.71 0.472452
Target:  5'- cCCCACACcucccuucCUC-CCCGCCCCcgacCCGCc -3'
miRNA:   3'- -GGGUGUGa-------GAGaGGGCGGGGu---GGUGu -5'
29567 3' -59.9 NC_006151.1 + 109424 0.71 0.472452
Target:  5'- gCCGCACcaccgCCgGCCCCACCACc -3'
miRNA:   3'- gGGUGUGagagaGGgCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 117009 0.71 0.472452
Target:  5'- aCCACGCgCUCcCCCGCgggCCCggGCCGCAg -3'
miRNA:   3'- gGGUGUGaGAGaGGGCG---GGG--UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 7874 0.7 0.481629
Target:  5'- cCCCACcccucuaucuCUCUCUCCCGguccCCCCucCCACc -3'
miRNA:   3'- -GGGUGu---------GAGAGAGGGC----GGGGu-GGUGu -5'
29567 3' -59.9 NC_006151.1 + 47011 0.7 0.481629
Target:  5'- uCCCGCuccuGCUCcugCUCCCgGCCCCACUc-- -3'
miRNA:   3'- -GGGUG----UGAGa--GAGGG-CGGGGUGGugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.