miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 5' -62.8 NC_006151.1 + 19887 0.66 0.574219
Target:  5'- gCGcCAgGGCcaGCAGCGCCAGGa-GCUg -3'
miRNA:   3'- -GCaGUgCCG--CGUCGUGGUCCggCGGa -5'
29570 5' -62.8 NC_006151.1 + 65101 0.66 0.574219
Target:  5'- gGUCGC-GCGCAuGCcCCAGGaggaCGCCc -3'
miRNA:   3'- gCAGUGcCGCGU-CGuGGUCCg---GCGGa -5'
29570 5' -62.8 NC_006151.1 + 99211 0.66 0.574219
Target:  5'- gGagGCGGUGCaggccAGCGCCucGCCGCUg -3'
miRNA:   3'- gCagUGCCGCG-----UCGUGGucCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 102401 0.66 0.574219
Target:  5'- gGUCGCGGCGC-GCGUCGcGCgGCCc -3'
miRNA:   3'- gCAGUGCCGCGuCGUGGUcCGgCGGa -5'
29570 5' -62.8 NC_006151.1 + 111544 0.66 0.574219
Target:  5'- -aUCAUGGCGC-GCAgC-GGCCGCg- -3'
miRNA:   3'- gcAGUGCCGCGuCGUgGuCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 118129 0.66 0.564492
Target:  5'- uCGUgGC-GCGCAGCGCCGacgacGCCGCg- -3'
miRNA:   3'- -GCAgUGcCGCGUCGUGGUc----CGGCGga -5'
29570 5' -62.8 NC_006151.1 + 27160 0.66 0.564492
Target:  5'- aCGUCGgccccgaGGCGCcgcgugucggGGCGCCaggGGGCCGCg- -3'
miRNA:   3'- -GCAGUg------CCGCG----------UCGUGG---UCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 54693 0.66 0.564492
Target:  5'- gCGUCGcCGGCaGC-GUGCUGGGCCaggGCCUg -3'
miRNA:   3'- -GCAGU-GCCG-CGuCGUGGUCCGG---CGGA- -5'
29570 5' -62.8 NC_006151.1 + 55435 0.66 0.564492
Target:  5'- gCGggCGCGGa-CGGgACCGGcGCCGCCg -3'
miRNA:   3'- -GCa-GUGCCgcGUCgUGGUC-CGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 63178 0.66 0.564492
Target:  5'- -cUUggGGCGCacGGgGCCGGGCuCGCCg -3'
miRNA:   3'- gcAGugCCGCG--UCgUGGUCCG-GCGGa -5'
29570 5' -62.8 NC_006151.1 + 135162 0.66 0.564492
Target:  5'- gCGggCGCGGCcCggacgGGCGCCGGcuGCCGCCg -3'
miRNA:   3'- -GCa-GUGCCGcG-----UCGUGGUC--CGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 60218 0.66 0.564492
Target:  5'- -cUCGCcGCGC-GCGCCGGaGCCGUCc -3'
miRNA:   3'- gcAGUGcCGCGuCGUGGUC-CGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 83359 0.66 0.564492
Target:  5'- cCGgCGCGcGCGCgGGCGCgCAGG-CGCCg -3'
miRNA:   3'- -GCaGUGC-CGCG-UCGUG-GUCCgGCGGa -5'
29570 5' -62.8 NC_006151.1 + 84903 0.66 0.564492
Target:  5'- gGcCAUGGUGUAcgccGCGCgCGGcGCCGCCUc -3'
miRNA:   3'- gCaGUGCCGCGU----CGUG-GUC-CGGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 117246 0.66 0.564492
Target:  5'- aCGUCGgcgggcccgaGGCGCGG-GCCGcgcgcGGCCGCCg -3'
miRNA:   3'- -GCAGUg---------CCGCGUCgUGGU-----CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 87582 0.66 0.563521
Target:  5'- aCGUCuCcGC-CGGCACCAucgacgccagcucGGCCGCCg -3'
miRNA:   3'- -GCAGuGcCGcGUCGUGGU-------------CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 125201 0.66 0.554808
Target:  5'- gCGUCGUGGgcccCGCGGCccCCGcGGCCGCCc -3'
miRNA:   3'- -GCAGUGCC----GCGUCGu-GGU-CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 116976 0.66 0.554808
Target:  5'- aCGUCGCuGGaCGUgaGGCGCUGGuGCCGCa- -3'
miRNA:   3'- -GCAGUG-CC-GCG--UCGUGGUC-CGGCGga -5'
29570 5' -62.8 NC_006151.1 + 37933 0.66 0.554808
Target:  5'- uCGcCGCcGCGCAGC-CC-GGCCGCg- -3'
miRNA:   3'- -GCaGUGcCGCGUCGuGGuCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 59515 0.66 0.554808
Target:  5'- gCGaCGCGcGCGCAGCGCCgcgugaGGGCCcaGCg- -3'
miRNA:   3'- -GCaGUGC-CGCGUCGUGG------UCCGG--CGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.