miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 5' -62.8 NC_006151.1 + 2358 0.66 0.593783
Target:  5'- gCGcCGCGGCGCagaaGGCGCgCAacucGGCCGgCa -3'
miRNA:   3'- -GCaGUGCCGCG----UCGUG-GU----CCGGCgGa -5'
29570 5' -62.8 NC_006151.1 + 115289 0.66 0.593783
Target:  5'- gCGUUGaugaaGGCGCAguuguucuugcGCACCAGGUcgaCGCCc -3'
miRNA:   3'- -GCAGUg----CCGCGU-----------CGUGGUCCG---GCGGa -5'
29570 5' -62.8 NC_006151.1 + 91104 0.66 0.593783
Target:  5'- uCGUCcCGGcCGCGGCGCCcu-UCGCCa -3'
miRNA:   3'- -GCAGuGCC-GCGUCGUGGuccGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 69350 0.66 0.583985
Target:  5'- aG-CGCGGCGUAGCccgcguccaGCCAGucgagcGCCGUCa -3'
miRNA:   3'- gCaGUGCCGCGUCG---------UGGUC------CGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 31770 0.66 0.583985
Target:  5'- ---gGCgGGCGC-GCGCCGGGCgGCUc -3'
miRNA:   3'- gcagUG-CCGCGuCGUGGUCCGgCGGa -5'
29570 5' -62.8 NC_006151.1 + 68384 0.66 0.583985
Target:  5'- cCGUCAgGGcCGCGGcCACCuccauGGCgCGCg- -3'
miRNA:   3'- -GCAGUgCC-GCGUC-GUGGu----CCG-GCGga -5'
29570 5' -62.8 NC_006151.1 + 103681 0.66 0.583985
Target:  5'- gCG-CGCGGCgggGguGCugCGcGCCGCCg -3'
miRNA:   3'- -GCaGUGCCG---CguCGugGUcCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 71088 0.66 0.583985
Target:  5'- --cCACGGCGCcgcgGGCGCgGGcGCCGUg- -3'
miRNA:   3'- gcaGUGCCGCG----UCGUGgUC-CGGCGga -5'
29570 5' -62.8 NC_006151.1 + 87489 0.66 0.583985
Target:  5'- cCGcCGCGGcCGCccccguUCAGGCCGCCg -3'
miRNA:   3'- -GCaGUGCC-GCGucgu--GGUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 99728 0.66 0.583985
Target:  5'- aCGagCGCGGCGCucGUcgACCucGCCGCCg -3'
miRNA:   3'- -GCa-GUGCCGCGu-CG--UGGucCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 111850 0.66 0.583985
Target:  5'- gCGUCGgggGGCGCucgGGguCgCAGGCCGUCUc -3'
miRNA:   3'- -GCAGUg--CCGCG---UCguG-GUCCGGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 127455 0.66 0.583985
Target:  5'- ---gGCGGCGCacgaAGCGCUGGGCgGCg- -3'
miRNA:   3'- gcagUGCCGCG----UCGUGGUCCGgCGga -5'
29570 5' -62.8 NC_006151.1 + 66866 0.66 0.583985
Target:  5'- cCGggGCGGCGCGaagggcGCGCCcGGCCccgcGCCg -3'
miRNA:   3'- -GCagUGCCGCGU------CGUGGuCCGG----CGGa -5'
29570 5' -62.8 NC_006151.1 + 112133 0.66 0.583007
Target:  5'- cCGUCACgcaggaccuGGUGCAGguCCAgaaacuuguugacGGCCGCg- -3'
miRNA:   3'- -GCAGUG---------CCGCGUCguGGU-------------CCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 113115 0.66 0.583007
Target:  5'- gGcCGCGGaCGCGGacgcCGCCGGGCCcggcuacGCCg -3'
miRNA:   3'- gCaGUGCC-GCGUC----GUGGUCCGG-------CGGa -5'
29570 5' -62.8 NC_006151.1 + 135001 0.66 0.581052
Target:  5'- gCGUCuuGGCgggggcgcggggggGCAGCAgCgGGGCCGCg- -3'
miRNA:   3'- -GCAGugCCG--------------CGUCGU-GgUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 82997 0.66 0.580074
Target:  5'- cCGcCACGGcCGCGGCGCagacgcgcggcgaGGGCC-CCa -3'
miRNA:   3'- -GCaGUGCC-GCGUCGUGg------------UCCGGcGGa -5'
29570 5' -62.8 NC_006151.1 + 102401 0.66 0.574219
Target:  5'- gGUCGCGGCGC-GCGUCGcGCgGCCc -3'
miRNA:   3'- gCAGUGCCGCGuCGUGGUcCGgCGGa -5'
29570 5' -62.8 NC_006151.1 + 99211 0.66 0.574219
Target:  5'- gGagGCGGUGCaggccAGCGCCucGCCGCUg -3'
miRNA:   3'- gCagUGCCGCG-----UCGUGGucCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 65101 0.66 0.574219
Target:  5'- gGUCGC-GCGCAuGCcCCAGGaggaCGCCc -3'
miRNA:   3'- gCAGUGcCGCGU-CGuGGUCCg---GCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.