miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 5' -62.8 NC_006151.1 + 11877 0.68 0.452585
Target:  5'- gCGUCGCGGCGau---UCGGGCCGCa- -3'
miRNA:   3'- -GCAGUGCCGCgucguGGUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 15042 0.67 0.526074
Target:  5'- gCGUcCACGGCGCgcggggccccGGCGCCuucugcgcGGCCcCCUg -3'
miRNA:   3'- -GCA-GUGCCGCG----------UCGUGGu-------CCGGcGGA- -5'
29570 5' -62.8 NC_006151.1 + 16972 0.67 0.496992
Target:  5'- -cUCGcCGGCGUGGCGCCAGGagcgguuguggacCCGCg- -3'
miRNA:   3'- gcAGU-GCCGCGUCGUGGUCC-------------GGCGga -5'
29570 5' -62.8 NC_006151.1 + 17048 0.74 0.200229
Target:  5'- aCGUcCAgGGCGuCGGCGuccgucagcCCGGGCCGCCg -3'
miRNA:   3'- -GCA-GUgCCGC-GUCGU---------GGUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 17089 0.68 0.470458
Target:  5'- gGUCA-GGCGC-GCGCCcgucGGGgCGCCg -3'
miRNA:   3'- gCAGUgCCGCGuCGUGG----UCCgGCGGa -5'
29570 5' -62.8 NC_006151.1 + 17125 0.67 0.488683
Target:  5'- ---gGCGGCGguGCugCgggAGGCgGCCa -3'
miRNA:   3'- gcagUGCCGCguCGugG---UCCGgCGGa -5'
29570 5' -62.8 NC_006151.1 + 17819 0.7 0.369243
Target:  5'- --cCugGGCGCGGCGgggCGGGCgGCCa -3'
miRNA:   3'- gcaGugCCGCGUCGUg--GUCCGgCGGa -5'
29570 5' -62.8 NC_006151.1 + 18691 0.66 0.554808
Target:  5'- aCGggcgCGCGG-GCGGCGCCGGcGUCGUg- -3'
miRNA:   3'- -GCa---GUGCCgCGUCGUGGUC-CGGCGga -5'
29570 5' -62.8 NC_006151.1 + 18996 0.69 0.393127
Target:  5'- aCG-CGCGGCGCGcCACCAG-CCGCg- -3'
miRNA:   3'- -GCaGUGCCGCGUcGUGGUCcGGCGga -5'
29570 5' -62.8 NC_006151.1 + 19521 0.69 0.409597
Target:  5'- aGgCGCGGCcCAGCACCAGGuCCGg-- -3'
miRNA:   3'- gCaGUGCCGcGUCGUGGUCC-GGCgga -5'
29570 5' -62.8 NC_006151.1 + 19887 0.66 0.574219
Target:  5'- gCGcCAgGGCcaGCAGCGCCAGGa-GCUg -3'
miRNA:   3'- -GCaGUgCCG--CGUCGUGGUCCggCGGa -5'
29570 5' -62.8 NC_006151.1 + 19913 0.66 0.593783
Target:  5'- uG-CGCGGCGCgcAGCAgaaaGGGCCGCa- -3'
miRNA:   3'- gCaGUGCCGCG--UCGUgg--UCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 20143 0.71 0.324535
Target:  5'- gCGcCGCgGGgGCGGCGCguGGaCCGCCg -3'
miRNA:   3'- -GCaGUG-CCgCGUCGUGguCC-GGCGGa -5'
29570 5' -62.8 NC_006151.1 + 20204 0.78 0.102666
Target:  5'- -uUC-CGcGCGCAGCGCCGGGCCGCg- -3'
miRNA:   3'- gcAGuGC-CGCGUCGUGGUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 20628 0.71 0.317487
Target:  5'- gGUgGgGGCGCccccugggcGGCACCAGGgCCGUCa -3'
miRNA:   3'- gCAgUgCCGCG---------UCGUGGUCC-GGCGGa -5'
29570 5' -62.8 NC_006151.1 + 21438 0.66 0.593783
Target:  5'- gGUCGCGGCGUgggguGGCcCCcGGCgGCg- -3'
miRNA:   3'- gCAGUGCCGCG-----UCGuGGuCCGgCGga -5'
29570 5' -62.8 NC_006151.1 + 22075 0.73 0.241858
Target:  5'- gGcCACgugGGCGCGGUACgUGGGCCGCCg -3'
miRNA:   3'- gCaGUG---CCGCGUCGUG-GUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 22292 0.67 0.50443
Target:  5'- gCGggCACGGCGUccacguccgcgccgAGCgucguccgggcgACCAGcGCCGCCa -3'
miRNA:   3'- -GCa-GUGCCGCG--------------UCG------------UGGUC-CGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 23726 0.68 0.452585
Target:  5'- -cUCGCGGUggacgaGgGGCACCuugcaguGGCCGCCg -3'
miRNA:   3'- gcAGUGCCG------CgUCGUGGu------CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 23898 0.68 0.470458
Target:  5'- aCGggCugGGCGuCGGUcgcggGCCcgacGGGCCGCCg -3'
miRNA:   3'- -GCa-GugCCGC-GUCG-----UGG----UCCGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.