miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 5' -62.8 NC_006151.1 + 2305 0.67 0.516619
Target:  5'- ---gACGGCGCccggggucAGCACCagcgGGGCgGCCUc -3'
miRNA:   3'- gcagUGCCGCG--------UCGUGG----UCCGgCGGA- -5'
29570 5' -62.8 NC_006151.1 + 2358 0.66 0.593783
Target:  5'- gCGcCGCGGCGCagaaGGCGCgCAacucGGCCGgCa -3'
miRNA:   3'- -GCaGUGCCGCG----UCGUG-GU----CCGGCgGa -5'
29570 5' -62.8 NC_006151.1 + 2774 0.67 0.545174
Target:  5'- aCGgccgCGCGGagcuCGCGGCAcCCGGGCCaGCg- -3'
miRNA:   3'- -GCa---GUGCC----GCGUCGU-GGUCCGG-CGga -5'
29570 5' -62.8 NC_006151.1 + 3090 0.76 0.149524
Target:  5'- ---gGCGGCgaGCAGCGCCgagAGGCCGCCg -3'
miRNA:   3'- gcagUGCCG--CGUCGUGG---UCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 3115 0.69 0.426489
Target:  5'- --nCGCGGCGCGGguCcCAGGCCGg-- -3'
miRNA:   3'- gcaGUGCCGCGUCguG-GUCCGGCgga -5'
29570 5' -62.8 NC_006151.1 + 3265 0.73 0.220206
Target:  5'- gCGcCGCGGCGCGcggcgauguGCGCCAgGGCgGCCg -3'
miRNA:   3'- -GCaGUGCCGCGU---------CGUGGU-CCGgCGGa -5'
29570 5' -62.8 NC_006151.1 + 3565 0.68 0.442914
Target:  5'- aGUCcgagggaGCGGCGCuuGCGCCGgGGCCcCCg -3'
miRNA:   3'- gCAG-------UGCCGCGu-CGUGGU-CCGGcGGa -5'
29570 5' -62.8 NC_006151.1 + 3673 0.66 0.603607
Target:  5'- cCGUCccCGGgGCGGCGggccCCGGGCgCGCg- -3'
miRNA:   3'- -GCAGu-GCCgCGUCGU----GGUCCG-GCGga -5'
29570 5' -62.8 NC_006151.1 + 4022 0.8 0.083702
Target:  5'- gGcCGCGGCGUAGguCCAGGCgGCCUc -3'
miRNA:   3'- gCaGUGCCGCGUCguGGUCCGgCGGA- -5'
29570 5' -62.8 NC_006151.1 + 4161 0.72 0.283981
Target:  5'- gCGUCGCGGagcgcgaGCAGCGC--GGCCGUCa -3'
miRNA:   3'- -GCAGUGCCg------CGUCGUGguCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 4313 0.7 0.369243
Target:  5'- -cUCGCGGgGCAcGCgGCCGGGCUGCg- -3'
miRNA:   3'- gcAGUGCCgCGU-CG-UGGUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 4402 0.75 0.177492
Target:  5'- gGUcCGCGGCGCGGC-CCGGGUagGCCa -3'
miRNA:   3'- gCA-GUGCCGCGUCGuGGUCCGg-CGGa -5'
29570 5' -62.8 NC_006151.1 + 4793 0.79 0.092725
Target:  5'- gGcCGCGGCGCGGUAgCGGGCCGCg- -3'
miRNA:   3'- gCaGUGCCGCGUCGUgGUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 5118 0.67 0.526074
Target:  5'- gCGgCcCGGCGCgggcgaguggGGCGCCGGGCCGgacuCCUu -3'
miRNA:   3'- -GCaGuGCCGCG----------UCGUGGUCCGGC----GGA- -5'
29570 5' -62.8 NC_006151.1 + 5358 0.73 0.220206
Target:  5'- -cUC-CGGCGCGGCGCCggcgGGGCUGUCUc -3'
miRNA:   3'- gcAGuGCCGCGUCGUGG----UCCGGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 6230 0.71 0.310555
Target:  5'- aGcCGCGGCGCcgggAGC-CCuGGCUGCCg -3'
miRNA:   3'- gCaGUGCCGCG----UCGuGGuCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 10197 0.7 0.338978
Target:  5'- gGUCGCGGCGCgGGCGgC-GGCUGCa- -3'
miRNA:   3'- gCAGUGCCGCG-UCGUgGuCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 10492 0.67 0.507232
Target:  5'- cCGcC-CGGCGC-GCGCCc-GCCGCCg -3'
miRNA:   3'- -GCaGuGCCGCGuCGUGGucCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 10638 0.68 0.451701
Target:  5'- uCGUgC-CGGCGCGGCAuccccgcCCAGGCgGCg- -3'
miRNA:   3'- -GCA-GuGCCGCGUCGU-------GGUCCGgCGga -5'
29570 5' -62.8 NC_006151.1 + 10984 0.71 0.323825
Target:  5'- uGUCACGGUGgAGCggGCCGGGggccccggcucgcCCGCCc -3'
miRNA:   3'- gCAGUGCCGCgUCG--UGGUCC-------------GGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.