miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 5' -62.8 NC_006151.1 + 68274 0.83 0.04856
Target:  5'- gGUCGCGGCGCcgGGCGCCAcGGCgGCCa -3'
miRNA:   3'- gCAGUGCCGCG--UCGUGGU-CCGgCGGa -5'
29570 5' -62.8 NC_006151.1 + 4022 0.8 0.083702
Target:  5'- gGcCGCGGCGUAGguCCAGGCgGCCUc -3'
miRNA:   3'- gCaGUGCCGCGUCguGGUCCGgCGGA- -5'
29570 5' -62.8 NC_006151.1 + 63997 0.79 0.088104
Target:  5'- cCGUCugcguGCGGUGCGGCGCCAGG-CGCCc -3'
miRNA:   3'- -GCAG-----UGCCGCGUCGUGGUCCgGCGGa -5'
29570 5' -62.8 NC_006151.1 + 4793 0.79 0.092725
Target:  5'- gGcCGCGGCGCGGUAgCGGGCCGCg- -3'
miRNA:   3'- gCaGUGCCGCGUCGUgGUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 20204 0.78 0.102666
Target:  5'- -uUC-CGcGCGCAGCGCCGGGCCGCg- -3'
miRNA:   3'- gcAGuGC-CGCGUCGUGGUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 52457 0.78 0.108005
Target:  5'- cCGUgACGGCGgccaGGCGCCgguAGGCCGCCg -3'
miRNA:   3'- -GCAgUGCCGCg---UCGUGG---UCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 106653 0.77 0.119473
Target:  5'- aCGcCGCGGCGCAcguGCGCgAGGCCGCg- -3'
miRNA:   3'- -GCaGUGCCGCGU---CGUGgUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 73378 0.77 0.119473
Target:  5'- cCGUCACGggggcGCGCAGCGC--GGCCGCCg -3'
miRNA:   3'- -GCAGUGC-----CGCGUCGUGguCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 26346 0.77 0.122512
Target:  5'- -cUCACGGgGCGGCGgCGGGCCGCg- -3'
miRNA:   3'- gcAGUGCCgCGUCGUgGUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 130626 0.77 0.122512
Target:  5'- gGUCGCGGCuCAcgaGCGCCgccgAGGCCGCCUg -3'
miRNA:   3'- gCAGUGCCGcGU---CGUGG----UCCGGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 123905 0.77 0.128485
Target:  5'- cCGU-GCGGCGCGGCgGCCgugacgcGGGCCGCCUc -3'
miRNA:   3'- -GCAgUGCCGCGUCG-UGG-------UCCGGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 58654 0.77 0.132065
Target:  5'- cCGggAgGGCGCGGCGCaGGGCCGCCa -3'
miRNA:   3'- -GCagUgCCGCGUCGUGgUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 58734 0.77 0.132065
Target:  5'- cCGcUCGCGucGCGCAGCGCCGcggccaccgcGGCCGCCg -3'
miRNA:   3'- -GC-AGUGC--CGCGUCGUGGU----------CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 96585 0.76 0.138467
Target:  5'- -cUCGCGGCGCgaGGCGCCGGGCgcgggcgCGCCg -3'
miRNA:   3'- gcAGUGCCGCG--UCGUGGUCCG-------GCGGa -5'
29570 5' -62.8 NC_006151.1 + 69282 0.76 0.142302
Target:  5'- aGUgGCGGCGCGcCACCagggacacGGGCCGCCg -3'
miRNA:   3'- gCAgUGCCGCGUcGUGG--------UCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 130011 0.76 0.142302
Target:  5'- cCGagACGGCGC-GCGCCAcGGCCGUCg -3'
miRNA:   3'- -GCagUGCCGCGuCGUGGU-CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 107032 0.76 0.145872
Target:  5'- -aUCGCGGCGCGGCcCCuGGCCGgCg -3'
miRNA:   3'- gcAGUGCCGCGUCGuGGuCCGGCgGa -5'
29570 5' -62.8 NC_006151.1 + 74350 0.76 0.149524
Target:  5'- cCG-CACGG-GCcgguuguGCACCAGGCCGCCg -3'
miRNA:   3'- -GCaGUGCCgCGu------CGUGGUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 3090 0.76 0.149524
Target:  5'- ---gGCGGCgaGCAGCGCCgagAGGCCGCCg -3'
miRNA:   3'- gcagUGCCG--CGUCGUGG---UCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 104333 0.75 0.164976
Target:  5'- cCGUCGCGGCGCccguCAUCGGGUCGCUc -3'
miRNA:   3'- -GCAGUGCCGCGuc--GUGGUCCGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.