miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 5' -62.8 NC_006151.1 + 59419 0.66 0.593783
Target:  5'- ---aGCaGCaGCGGCGCCAgcucggcgucGGCCGCCg -3'
miRNA:   3'- gcagUGcCG-CGUCGUGGU----------CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 2358 0.66 0.593783
Target:  5'- gCGcCGCGGCGCagaaGGCGCgCAacucGGCCGgCa -3'
miRNA:   3'- -GCaGUGCCGCG----UCGUG-GU----CCGGCgGa -5'
29570 5' -62.8 NC_006151.1 + 115289 0.66 0.593783
Target:  5'- gCGUUGaugaaGGCGCAguuguucuugcGCACCAGGUcgaCGCCc -3'
miRNA:   3'- -GCAGUg----CCGCGU-----------CGUGGUCCG---GCGGa -5'
29570 5' -62.8 NC_006151.1 + 91104 0.66 0.593783
Target:  5'- uCGUCcCGGcCGCGGCGCCcu-UCGCCa -3'
miRNA:   3'- -GCAGuGCC-GCGUCGUGGuccGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 89515 0.66 0.593783
Target:  5'- ----gUGGCGCAGCggACguGGuCCGCCUc -3'
miRNA:   3'- gcaguGCCGCGUCG--UGguCC-GGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 55230 0.66 0.593783
Target:  5'- --cCACGGCGcCGGCGCgcagccggugCAGGaCGCCUu -3'
miRNA:   3'- gcaGUGCCGC-GUCGUG----------GUCCgGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 37992 0.66 0.593783
Target:  5'- uGcCGCGGCGUccucgAGCGCCu-GCUGCCc -3'
miRNA:   3'- gCaGUGCCGCG-----UCGUGGucCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 19913 0.66 0.593783
Target:  5'- uG-CGCGGCGCgcAGCAgaaaGGGCCGCa- -3'
miRNA:   3'- gCaGUGCCGCG--UCGUgg--UCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 129528 0.66 0.593783
Target:  5'- cCGcCgACGGgGgGGCcCgGGGCCGCCg -3'
miRNA:   3'- -GCaG-UGCCgCgUCGuGgUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 39157 0.66 0.593783
Target:  5'- gCGcCGCGGCGgccucuCGGCGCUgcucGCCGCCUu -3'
miRNA:   3'- -GCaGUGCCGC------GUCGUGGuc--CGGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 51409 0.66 0.593783
Target:  5'- gCGUCGCaGCGCGuGCACCcguccguGGCCaugacgcggacGCCg -3'
miRNA:   3'- -GCAGUGcCGCGU-CGUGGu------CCGG-----------CGGa -5'
29570 5' -62.8 NC_006151.1 + 71905 0.66 0.59771
Target:  5'- -aUCACGGCGCccucguugagcAggaagaucauguucaGCACCAgcgagcgcguGGCCGCCUc -3'
miRNA:   3'- gcAGUGCCGCG-----------U---------------CGUGGU----------CCGGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 135300 0.66 0.607543
Target:  5'- gCGUCgACGGCGCcgaccgagagguacaGGUGCaugAGcGCCGCCa -3'
miRNA:   3'- -GCAG-UGCCGCG---------------UCGUGg--UC-CGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 3673 0.66 0.603607
Target:  5'- cCGUCccCGGgGCGGCGggccCCGGGCgCGCg- -3'
miRNA:   3'- -GCAGu-GCCgCGUCGU----GGUCCG-GCGga -5'
29570 5' -62.8 NC_006151.1 + 61010 0.66 0.603607
Target:  5'- uCGUCcacGCGGUGCAggcucucgaucuGCACCAGcaGCCGgCg -3'
miRNA:   3'- -GCAG---UGCCGCGU------------CGUGGUC--CGGCgGa -5'
29570 5' -62.8 NC_006151.1 + 136593 0.66 0.603607
Target:  5'- gCG-CGCGGCuccGCgAGCACCuGGaCGCCg -3'
miRNA:   3'- -GCaGUGCCG---CG-UCGUGGuCCgGCGGa -5'
29570 5' -62.8 NC_006151.1 + 52850 0.66 0.603607
Target:  5'- gCGUCA-GGUGCGGCugCuGcGUgGCCUc -3'
miRNA:   3'- -GCAGUgCCGCGUCGugGuC-CGgCGGA- -5'
29570 5' -62.8 NC_006151.1 + 135758 0.66 0.602624
Target:  5'- uCGUaCGCGuGgGaCGGCGCCGGGCUggacgagGCCUu -3'
miRNA:   3'- -GCA-GUGC-CgC-GUCGUGGUCCGG-------CGGA- -5'
29570 5' -62.8 NC_006151.1 + 81698 0.66 0.602624
Target:  5'- gGUCGCccGCGCgagguccagccggGGCGCCGGGUccuCGCCg -3'
miRNA:   3'- gCAGUGc-CGCG-------------UCGUGGUCCG---GCGGa -5'
29570 5' -62.8 NC_006151.1 + 104976 0.66 0.600658
Target:  5'- aCGcCGCcGC-CGGCcucgcucaacaucgACCGGGCCGCCUc -3'
miRNA:   3'- -GCaGUGcCGcGUCG--------------UGGUCCGGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.