miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 5' -62.8 NC_006151.1 + 37125 0.75 0.164976
Target:  5'- aGUCcggccCGGCGCcccacucgcccGCGCCGGGCCGCCa -3'
miRNA:   3'- gCAGu----GCCGCGu----------CGUGGUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 86723 0.75 0.169058
Target:  5'- gGUCGCGGCGCGcCGCCgcgAGGCCGgCg -3'
miRNA:   3'- gCAGUGCCGCGUcGUGG---UCCGGCgGa -5'
29570 5' -62.8 NC_006151.1 + 67724 0.75 0.173229
Target:  5'- aGgCACGGCGCGGCGCaCAGGCaCGgCg -3'
miRNA:   3'- gCaGUGCCGCGUCGUG-GUCCG-GCgGa -5'
29570 5' -62.8 NC_006151.1 + 4402 0.75 0.177492
Target:  5'- gGUcCGCGGCGCGGC-CCGGGUagGCCa -3'
miRNA:   3'- gCA-GUGCCGCGUCGuGGUCCGg-CGGa -5'
29570 5' -62.8 NC_006151.1 + 103345 0.75 0.181848
Target:  5'- ---gGCGGCGCAGCAgCGcGCCGCCg -3'
miRNA:   3'- gcagUGCCGCGUCGUgGUcCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 130736 0.75 0.181848
Target:  5'- gGcCGCGGCGCAGCGCCAcccacgacGGCaugGCCa -3'
miRNA:   3'- gCaGUGCCGCGUCGUGGU--------CCGg--CGGa -5'
29570 5' -62.8 NC_006151.1 + 98530 0.75 0.186298
Target:  5'- uCGUCaACGGCGaCGaCACCAcGGCCGCCc -3'
miRNA:   3'- -GCAG-UGCCGC-GUcGUGGU-CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 123239 0.74 0.190844
Target:  5'- gCG-CACGGCGCGcGUucuGCgAGGCCGCCg -3'
miRNA:   3'- -GCaGUGCCGCGU-CG---UGgUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 104267 0.74 0.195488
Target:  5'- aCG-C-CGGCGCGGCGgCGGGCcCGCCg -3'
miRNA:   3'- -GCaGuGCCGCGUCGUgGUCCG-GCGGa -5'
29570 5' -62.8 NC_006151.1 + 17048 0.74 0.200229
Target:  5'- aCGUcCAgGGCGuCGGCGuccgucagcCCGGGCCGCCg -3'
miRNA:   3'- -GCA-GUgCCGC-GUCGU---------GGUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 112707 0.74 0.200229
Target:  5'- --aCGCGGCGCuguGCGCCaAGGCCcugGCCUg -3'
miRNA:   3'- gcaGUGCCGCGu--CGUGG-UCCGG---CGGA- -5'
29570 5' -62.8 NC_006151.1 + 131118 0.74 0.20507
Target:  5'- gGcCGCGGCGCgggaggccgcGGCGCCGcGGCCGUCa -3'
miRNA:   3'- gCaGUGCCGCG----------UCGUGGU-CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 61762 0.74 0.20507
Target:  5'- gGUCGCGGgggccguggugcUGCGGCGCgAGGCCgGCCg -3'
miRNA:   3'- gCAGUGCC------------GCGUCGUGgUCCGG-CGGa -5'
29570 5' -62.8 NC_006151.1 + 104839 0.74 0.210013
Target:  5'- uCGcCGCGGCGgaGGCggACCAGGCCGCg- -3'
miRNA:   3'- -GCaGUGCCGCg-UCG--UGGUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 118881 0.74 0.210013
Target:  5'- ---gGCGGCGCGGCGgCGacgcGGCCGCCg -3'
miRNA:   3'- gcagUGCCGCGUCGUgGU----CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 89270 0.74 0.210013
Target:  5'- gGUCgACGGCGCcGCGgCGauGGCCGCCg -3'
miRNA:   3'- gCAG-UGCCGCGuCGUgGU--CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 57888 0.74 0.210013
Target:  5'- aCGUCGCaGCGCAG-GCgCAGGCCGCa- -3'
miRNA:   3'- -GCAGUGcCGCGUCgUG-GUCCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 28165 0.74 0.214548
Target:  5'- cCGUCGgcgucguUGGgGCGGCgagugccgucgGCCGGGCCGCCa -3'
miRNA:   3'- -GCAGU-------GCCgCGUCG-----------UGGUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 129187 0.74 0.214548
Target:  5'- cCGcCACGGcCGCcgucAGCACCuccccggGGGCCGCCa -3'
miRNA:   3'- -GCaGUGCC-GCG----UCGUGG-------UCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 81909 0.74 0.214548
Target:  5'- gGUCGCGGCGCGcCGCCucggagaagacgaAGGCgGCCa -3'
miRNA:   3'- gCAGUGCCGCGUcGUGG-------------UCCGgCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.