Results 21 - 40 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29570 | 5' | -62.8 | NC_006151.1 | + | 59419 | 0.66 | 0.593783 |
Target: 5'- ---aGCaGCaGCGGCGCCAgcucggcgucGGCCGCCg -3' miRNA: 3'- gcagUGcCG-CGUCGUGGU----------CCGGCGGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 129528 | 0.66 | 0.593783 |
Target: 5'- cCGcCgACGGgGgGGCcCgGGGCCGCCg -3' miRNA: 3'- -GCaG-UGCCgCgUCGuGgUCCGGCGGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 104976 | 0.66 | 0.600658 |
Target: 5'- aCGcCGCcGC-CGGCcucgcucaacaucgACCGGGCCGCCUc -3' miRNA: 3'- -GCaGUGcCGcGUCG--------------UGGUCCGGCGGA- -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 81698 | 0.66 | 0.602624 |
Target: 5'- gGUCGCccGCGCgagguccagccggGGCGCCGGGUccuCGCCg -3' miRNA: 3'- gCAGUGc-CGCG-------------UCGUGGUCCG---GCGGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 135758 | 0.66 | 0.602624 |
Target: 5'- uCGUaCGCGuGgGaCGGCGCCGGGCUggacgagGCCUu -3' miRNA: 3'- -GCA-GUGC-CgC-GUCGUGGUCCGG-------CGGA- -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 52850 | 0.66 | 0.603607 |
Target: 5'- gCGUCA-GGUGCGGCugCuGcGUgGCCUc -3' miRNA: 3'- -GCAGUgCCGCGUCGugGuC-CGgCGGA- -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 136593 | 0.66 | 0.603607 |
Target: 5'- gCG-CGCGGCuccGCgAGCACCuGGaCGCCg -3' miRNA: 3'- -GCaGUGCCG---CG-UCGUGGuCCgGCGGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 61010 | 0.66 | 0.603607 |
Target: 5'- uCGUCcacGCGGUGCAggcucucgaucuGCACCAGcaGCCGgCg -3' miRNA: 3'- -GCAG---UGCCGCGU------------CGUGGUC--CGGCgGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 3673 | 0.66 | 0.603607 |
Target: 5'- cCGUCccCGGgGCGGCGggccCCGGGCgCGCg- -3' miRNA: 3'- -GCAGu-GCCgCGUCGU----GGUCCG-GCGga -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 135300 | 0.66 | 0.607543 |
Target: 5'- gCGUCgACGGCGCcgaccgagagguacaGGUGCaugAGcGCCGCCa -3' miRNA: 3'- -GCAG-UGCCGCG---------------UCGUGg--UC-CGGCGGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 71905 | 0.66 | 0.59771 |
Target: 5'- -aUCACGGCGCccucguugagcAggaagaucauguucaGCACCAgcgagcgcguGGCCGCCUc -3' miRNA: 3'- gcAGUGCCGCG-----------U---------------CGUGGU----------CCGGCGGA- -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 51409 | 0.66 | 0.593783 |
Target: 5'- gCGUCGCaGCGCGuGCACCcguccguGGCCaugacgcggacGCCg -3' miRNA: 3'- -GCAGUGcCGCGU-CGUGGu------CCGG-----------CGGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 19913 | 0.66 | 0.593783 |
Target: 5'- uG-CGCGGCGCgcAGCAgaaaGGGCCGCa- -3' miRNA: 3'- gCaGUGCCGCG--UCGUgg--UCCGGCGga -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 37992 | 0.66 | 0.593783 |
Target: 5'- uGcCGCGGCGUccucgAGCGCCu-GCUGCCc -3' miRNA: 3'- gCaGUGCCGCG-----UCGUGGucCGGCGGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 55230 | 0.66 | 0.593783 |
Target: 5'- --cCACGGCGcCGGCGCgcagccggugCAGGaCGCCUu -3' miRNA: 3'- gcaGUGCCGC-GUCGUG----------GUCCgGCGGA- -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 89515 | 0.66 | 0.593783 |
Target: 5'- ----gUGGCGCAGCggACguGGuCCGCCUc -3' miRNA: 3'- gcaguGCCGCGUCG--UGguCC-GGCGGA- -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 91104 | 0.66 | 0.593783 |
Target: 5'- uCGUCcCGGcCGCGGCGCCcu-UCGCCa -3' miRNA: 3'- -GCAGuGCC-GCGUCGUGGuccGGCGGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 115289 | 0.66 | 0.593783 |
Target: 5'- gCGUUGaugaaGGCGCAguuguucuugcGCACCAGGUcgaCGCCc -3' miRNA: 3'- -GCAGUg----CCGCGU-----------CGUGGUCCG---GCGGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 2358 | 0.66 | 0.593783 |
Target: 5'- gCGcCGCGGCGCagaaGGCGCgCAacucGGCCGgCa -3' miRNA: 3'- -GCaGUGCCGCG----UCGUG-GU----CCGGCgGa -5' |
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29570 | 5' | -62.8 | NC_006151.1 | + | 39157 | 0.66 | 0.593783 |
Target: 5'- gCGcCGCGGCGgccucuCGGCGCUgcucGCCGCCUu -3' miRNA: 3'- -GCaGUGCCGC------GUCGUGGuc--CGGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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