miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 5' -62.8 NC_006151.1 + 142985 0.67 0.526074
Target:  5'- uGcCGCGGgugggcccgacCGCAGCAUCGcGGCuCGCCUu -3'
miRNA:   3'- gCaGUGCC-----------GCGUCGUGGU-CCG-GCGGA- -5'
29570 5' -62.8 NC_006151.1 + 142260 0.67 0.526074
Target:  5'- -aUCGCGGCGaggAGCGCCccgucccGGCgGCCa -3'
miRNA:   3'- gcAGUGCCGCg--UCGUGGu------CCGgCGGa -5'
29570 5' -62.8 NC_006151.1 + 140282 0.71 0.331699
Target:  5'- cCGUCgACGaGCuCGuGCGCCGGcGCCGCCUg -3'
miRNA:   3'- -GCAG-UGC-CGcGU-CGUGGUC-CGGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 139655 0.67 0.516619
Target:  5'- gGUCGCGGCG-GGCGC---GCCGCCc -3'
miRNA:   3'- gCAGUGCCGCgUCGUGgucCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 138338 0.67 0.545174
Target:  5'- cCGgCACGcGCGCAGCccGCCGGcCCGCa- -3'
miRNA:   3'- -GCaGUGC-CGCGUCG--UGGUCcGGCGga -5'
29570 5' -62.8 NC_006151.1 + 137909 0.72 0.271383
Target:  5'- gGUCgACGGCgGCGGCuGCCAcGGgCGCCUg -3'
miRNA:   3'- gCAG-UGCCG-CGUCG-UGGU-CCgGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 137869 0.68 0.479528
Target:  5'- aCGcgCACgGGCGCAGC-CUGcGGCUGCCc -3'
miRNA:   3'- -GCa-GUG-CCGCGUCGuGGU-CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 137657 0.66 0.554808
Target:  5'- cCGUCcCGGCGgacgAGCGCCcgccgugcGGCUGCCg -3'
miRNA:   3'- -GCAGuGCCGCg---UCGUGGu-------CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 137178 0.67 0.488683
Target:  5'- ---gGCGGCGCAgauGUACguGaGCCGCCa -3'
miRNA:   3'- gcagUGCCGCGU---CGUGguC-CGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 137134 0.71 0.310555
Target:  5'- aCGgCGCGGCGCgacgcGGCGCCGgagauGGCCGCg- -3'
miRNA:   3'- -GCaGUGCCGCG-----UCGUGGU-----CCGGCGga -5'
29570 5' -62.8 NC_006151.1 + 137069 0.68 0.452585
Target:  5'- gCGUgGagcUGGCGCaccGGCGCCAGGCCuucgcggugcugGCCg -3'
miRNA:   3'- -GCAgU---GCCGCG---UCGUGGUCCGG------------CGGa -5'
29570 5' -62.8 NC_006151.1 + 137007 0.71 0.317487
Target:  5'- gCG-CACGGCGCugGGCGCCcugcucGGCCuGCCg -3'
miRNA:   3'- -GCaGUGCCGCG--UCGUGGu-----CCGG-CGGa -5'
29570 5' -62.8 NC_006151.1 + 136943 0.68 0.435089
Target:  5'- gCGcCgACGGCGCcguccuGCGCCGccugcuggagcuGGCCGCCg -3'
miRNA:   3'- -GCaG-UGCCGCGu-----CGUGGU------------CCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 136626 0.73 0.241858
Target:  5'- aCGUCACGGacccCGCGGCGCCcguGGGgCGCUc -3'
miRNA:   3'- -GCAGUGCC----GCGUCGUGG---UCCgGCGGa -5'
29570 5' -62.8 NC_006151.1 + 136593 0.66 0.603607
Target:  5'- gCG-CGCGGCuccGCgAGCACCuGGaCGCCg -3'
miRNA:   3'- -GCaGUGCCG---CG-UCGUGGuCCgGCGGa -5'
29570 5' -62.8 NC_006151.1 + 136376 0.69 0.393127
Target:  5'- uCGuUCGCGGCGCucucGCGCUucuGCUGCCUg -3'
miRNA:   3'- -GC-AGUGCCGCGu---CGUGGuc-CGGCGGA- -5'
29570 5' -62.8 NC_006151.1 + 135758 0.66 0.602624
Target:  5'- uCGUaCGCGuGgGaCGGCGCCGGGCUggacgagGCCUu -3'
miRNA:   3'- -GCA-GUGC-CgC-GUCGUGGUCCGG-------CGGA- -5'
29570 5' -62.8 NC_006151.1 + 135622 0.67 0.543253
Target:  5'- gGcCGCGGCGCccGCACCAcccggagaagauGCCGCCc -3'
miRNA:   3'- gCaGUGCCGCGu-CGUGGUc-----------CGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 135374 0.69 0.401308
Target:  5'- gGcCGCGuGCGCcgcgaccacGGCGuCCAGGCCGUCg -3'
miRNA:   3'- gCaGUGC-CGCG---------UCGU-GGUCCGGCGGa -5'
29570 5' -62.8 NC_006151.1 + 135300 0.66 0.607543
Target:  5'- gCGUCgACGGCGCcgaccgagagguacaGGUGCaugAGcGCCGCCa -3'
miRNA:   3'- -GCAG-UGCCGCG---------------UCGUGg--UC-CGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.