miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29574 3' -61.4 NC_006151.1 + 69444 0.66 0.707927
Target:  5'- cGCCgUUCgCGUCCUCGcgCGCCGcgGGCg -3'
miRNA:   3'- -CGGaGGGgGCAGGGGCuaGCGGC--UUG- -5'
29574 3' -61.4 NC_006151.1 + 81353 0.66 0.707927
Target:  5'- cGCCgCgCCCGgggCCCCGGcgggCGCC-AGCg -3'
miRNA:   3'- -CGGaGgGGGCa--GGGGCUa---GCGGcUUG- -5'
29574 3' -61.4 NC_006151.1 + 40464 0.66 0.698319
Target:  5'- uGCCUCCCCgG--CCCGGUgGCCc--- -3'
miRNA:   3'- -CGGAGGGGgCagGGGCUAgCGGcuug -5'
29574 3' -61.4 NC_006151.1 + 31220 0.66 0.698319
Target:  5'- gGCCgggCCCCCGgCCggCCGGccCGgCGAGCg -3'
miRNA:   3'- -CGGa--GGGGGCaGG--GGCUa-GCgGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 20758 0.66 0.698319
Target:  5'- cGCCUCCaCCgCGgcggaCGcgCGCCGGGCg -3'
miRNA:   3'- -CGGAGG-GG-GCaggg-GCuaGCGGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 65939 0.66 0.695426
Target:  5'- cGCCggCCCaGUCCUCGucgagcgcggccgcGUCGUCGAGCc -3'
miRNA:   3'- -CGGagGGGgCAGGGGC--------------UAGCGGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 7620 0.66 0.68866
Target:  5'- cCCUCCCgCGaCCCCcgcGGUCGCCccACc -3'
miRNA:   3'- cGGAGGGgGCaGGGG---CUAGCGGcuUG- -5'
29574 3' -61.4 NC_006151.1 + 32331 0.66 0.68866
Target:  5'- cGCgUCCCCa-UCUCCGAggcccgaggCGCCGGGg -3'
miRNA:   3'- -CGgAGGGGgcAGGGGCUa--------GCGGCUUg -5'
29574 3' -61.4 NC_006151.1 + 89000 0.66 0.68866
Target:  5'- cGCgUCCCCCa--CCCG--CGCCGAGa -3'
miRNA:   3'- -CGgAGGGGGcagGGGCuaGCGGCUUg -5'
29574 3' -61.4 NC_006151.1 + 132770 0.66 0.68866
Target:  5'- cGCCgggCCCUCGUCgaaggCCaGGUCGCUGAu- -3'
miRNA:   3'- -CGGa--GGGGGCAG-----GGgCUAGCGGCUug -5'
29574 3' -61.4 NC_006151.1 + 28856 0.66 0.678958
Target:  5'- cGgCUCCCCCauuggccggcgcGUCCCCGGagGCgGGu- -3'
miRNA:   3'- -CgGAGGGGG------------CAGGGGCUagCGgCUug -5'
29574 3' -61.4 NC_006151.1 + 13732 0.66 0.678958
Target:  5'- gGCCggUCCCggacgcCCGUCCCgCGG--GCCGGACc -3'
miRNA:   3'- -CGG--AGGG------GGCAGGG-GCUagCGGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 41604 0.66 0.678958
Target:  5'- aGCC-CgCCCCGgccgcgCCCCGGaaGCCGGc- -3'
miRNA:   3'- -CGGaG-GGGGCa-----GGGGCUagCGGCUug -5'
29574 3' -61.4 NC_006151.1 + 108167 0.66 0.678958
Target:  5'- uGCUcCCCCCG-CCCCGccCGCCc--- -3'
miRNA:   3'- -CGGaGGGGGCaGGGGCuaGCGGcuug -5'
29574 3' -61.4 NC_006151.1 + 117013 0.66 0.678958
Target:  5'- cGCgCUCCCCCGcgggCCCgggccgcaggCGGUaccaGCCGAAg -3'
miRNA:   3'- -CG-GAGGGGGCa---GGG----------GCUAg---CGGCUUg -5'
29574 3' -61.4 NC_006151.1 + 60593 0.66 0.678958
Target:  5'- cGCCgCCCCCGccgccUCCaCCGccgucGUCGCCGc-- -3'
miRNA:   3'- -CGGaGGGGGC-----AGG-GGC-----UAGCGGCuug -5'
29574 3' -61.4 NC_006151.1 + 77202 0.66 0.678958
Target:  5'- cGCgUCCUCCaUCCCCGcgcCGCCGcgUg -3'
miRNA:   3'- -CGgAGGGGGcAGGGGCua-GCGGCuuG- -5'
29574 3' -61.4 NC_006151.1 + 97966 0.66 0.678958
Target:  5'- cGCCUCCUCCagGUCgCgGugguucUUGCCGGGCg -3'
miRNA:   3'- -CGGAGGGGG--CAGgGgCu-----AGCGGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 39187 0.66 0.678958
Target:  5'- cGCCUucgCCCaCCGcCUCUGcaCGCCGGACu -3'
miRNA:   3'- -CGGA---GGG-GGCaGGGGCuaGCGGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 72248 0.66 0.669221
Target:  5'- -aCUgCCCgCGgCCgCCGA-CGCCGAGCg -3'
miRNA:   3'- cgGAgGGG-GCaGG-GGCUaGCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.