miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29574 5' -60.8 NC_006151.1 + 141807 0.78 0.142414
Target:  5'- --uCCCGCCCCGAGGGcacgggccgguucGGGGGUCcCg -3'
miRNA:   3'- aauGGGCGGGGCUCCU-------------UCCCCAGaGa -5'
29574 5' -60.8 NC_006151.1 + 33887 0.75 0.233427
Target:  5'- -gACCC-CCCCGGGGGcGGGGGcCUCg -3'
miRNA:   3'- aaUGGGcGGGGCUCCU-UCCCCaGAGa -5'
29574 5' -60.8 NC_006151.1 + 70124 0.75 0.233427
Target:  5'- -cGCCCGCgCgCCGcAGGAGGGGGUC-Cg -3'
miRNA:   3'- aaUGGGCG-G-GGC-UCCUUCCCCAGaGa -5'
29574 5' -60.8 NC_006151.1 + 38593 0.74 0.254763
Target:  5'- ---gCCGCCCCGGGGAcggcgaggaggacgAGGGGcUCUCc -3'
miRNA:   3'- aaugGGCGGGGCUCCU--------------UCCCC-AGAGa -5'
29574 5' -60.8 NC_006151.1 + 49710 0.73 0.281542
Target:  5'- -cACCCccuCCCCG-GGAGGGGGUgCUCg -3'
miRNA:   3'- aaUGGGc--GGGGCuCCUUCCCCA-GAGa -5'
29574 5' -60.8 NC_006151.1 + 40095 0.73 0.294739
Target:  5'- -gGCCgGCCCCggcGAGGAcGGGGaCUCUg -3'
miRNA:   3'- aaUGGgCGGGG---CUCCUuCCCCaGAGA- -5'
29574 5' -60.8 NC_006151.1 + 89158 0.73 0.308412
Target:  5'- -cGCCCGCCUCGGGcGAggcgggcgcGGGGGUCg-- -3'
miRNA:   3'- aaUGGGCGGGGCUC-CU---------UCCCCAGaga -5'
29574 5' -60.8 NC_006151.1 + 43276 0.72 0.337197
Target:  5'- -cGCuCUGCUuuGGGGggGGGGUcCUCg -3'
miRNA:   3'- aaUG-GGCGGggCUCCuuCCCCA-GAGa -5'
29574 5' -60.8 NC_006151.1 + 8376 0.71 0.375054
Target:  5'- --cCCCGcCCCCGGGGGgguccgggaugggGGGGGUCa-- -3'
miRNA:   3'- aauGGGC-GGGGCUCCU-------------UCCCCAGaga -5'
29574 5' -60.8 NC_006151.1 + 8728 0.71 0.391311
Target:  5'- -cGCCuCGgUCCGAGGAGGGGGgugcccgggcgugUCUCg -3'
miRNA:   3'- aaUGG-GCgGGGCUCCUUCCCC-------------AGAGa -5'
29574 5' -60.8 NC_006151.1 + 27798 0.7 0.408868
Target:  5'- -cACCCGCCcaacccaacCCGGGGGAGGGGa---- -3'
miRNA:   3'- aaUGGGCGG---------GGCUCCUUCCCCagaga -5'
29574 5' -60.8 NC_006151.1 + 27292 0.7 0.434783
Target:  5'- -cGCCCGCgCuuGGGGGgcguGGGGGUCg-- -3'
miRNA:   3'- aaUGGGCG-GggCUCCU----UCCCCAGaga -5'
29574 5' -60.8 NC_006151.1 + 141432 0.7 0.442741
Target:  5'- -gGCCCGgcgcgaacgacguCCCCGuAGGAGGGcGGUCUg- -3'
miRNA:   3'- aaUGGGC-------------GGGGC-UCCUUCC-CCAGAga -5'
29574 5' -60.8 NC_006151.1 + 34123 0.7 0.44363
Target:  5'- -cACCCGCCCCcccaccGGgcGGGGUC-Cg -3'
miRNA:   3'- aaUGGGCGGGGcu----CCuuCCCCAGaGa -5'
29574 5' -60.8 NC_006151.1 + 34028 0.7 0.456184
Target:  5'- -gGCCCuCCCCGccGGGAAGGGGacccggcccucuucgUCUCc -3'
miRNA:   3'- aaUGGGcGGGGC--UCCUUCCCC---------------AGAGa -5'
29574 5' -60.8 NC_006151.1 + 29186 0.68 0.517753
Target:  5'- -cGCCCGCuCUCGAGGAaaaAGGGG-Cg-- -3'
miRNA:   3'- aaUGGGCG-GGGCUCCU---UCCCCaGaga -5'
29574 5' -60.8 NC_006151.1 + 27630 0.68 0.517753
Target:  5'- -cGgCCGCCCCGAcGGGuGGGGGUggCUg -3'
miRNA:   3'- aaUgGGCGGGGCU-CCU-UCCCCAgaGA- -5'
29574 5' -60.8 NC_006151.1 + 13387 0.68 0.526415
Target:  5'- -cACCCGCCuCCGGGGAcgcgccggccaauGGGGGa---- -3'
miRNA:   3'- aaUGGGCGG-GGCUCCU-------------UCCCCagaga -5'
29574 5' -60.8 NC_006151.1 + 15021 0.68 0.527381
Target:  5'- -cGCCCGaCCCCGAGGAGGuGcGcGUC-Ca -3'
miRNA:   3'- aaUGGGC-GGGGCUCCUUC-C-C-CAGaGa -5'
29574 5' -60.8 NC_006151.1 + 20469 0.68 0.54683
Target:  5'- -cGCCgGucCCCCGGGGGggcgcGGGGGUCgUCg -3'
miRNA:   3'- aaUGGgC--GGGGCUCCU-----UCCCCAG-AGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.