Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 2190 | 0.67 | 0.596324 |
Target: 5'- -cGCCCGaggcCCCCGcGGGccGGuGGGUCUCc -3' miRNA: 3'- aaUGGGC----GGGGCuCCU--UC-CCCAGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 8376 | 0.71 | 0.375054 |
Target: 5'- --cCCCGcCCCCGGGGGgguccgggaugggGGGGGUCa-- -3' miRNA: 3'- aauGGGC-GGGGCUCCU-------------UCCCCAGaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 8728 | 0.71 | 0.391311 |
Target: 5'- -cGCCuCGgUCCGAGGAGGGGGgugcccgggcgugUCUCg -3' miRNA: 3'- aaUGG-GCgGGGCUCCUUCCCC-------------AGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 8970 | 0.66 | 0.656458 |
Target: 5'- -cGCgCGCCCCG-GGAA-GGGUCg-- -3' miRNA: 3'- aaUGgGCGGGGCuCCUUcCCCAGaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 12998 | 0.67 | 0.595325 |
Target: 5'- -cACCCGUCCCGGGGGAuucccugucccucGGGG-Cg-- -3' miRNA: 3'- aaUGGGCGGGGCUCCUU-------------CCCCaGaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 13387 | 0.68 | 0.526415 |
Target: 5'- -cACCCGCCuCCGGGGAcgcgccggccaauGGGGGa---- -3' miRNA: 3'- aaUGGGCGG-GGCUCCU-------------UCCCCagaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 15021 | 0.68 | 0.527381 |
Target: 5'- -cGCCCGaCCCCGAGGAGGuGcGcGUC-Ca -3' miRNA: 3'- aaUGGGC-GGGGCUCCUUC-C-C-CAGaGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 20469 | 0.68 | 0.54683 |
Target: 5'- -cGCCgGucCCCCGGGGGggcgcGGGGGUCgUCg -3' miRNA: 3'- aaUGGgC--GGGGCUCCU-----UCCCCAG-AGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 27292 | 0.7 | 0.434783 |
Target: 5'- -cGCCCGCgCuuGGGGGgcguGGGGGUCg-- -3' miRNA: 3'- aaUGGGCG-GggCUCCU----UCCCCAGaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 27630 | 0.68 | 0.517753 |
Target: 5'- -cGgCCGCCCCGAcGGGuGGGGGUggCUg -3' miRNA: 3'- aaUgGGCGGGGCU-CCU-UCCCCAgaGA- -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 27798 | 0.7 | 0.408868 |
Target: 5'- -cACCCGCCcaacccaacCCGGGGGAGGGGa---- -3' miRNA: 3'- aaUGGGCGG---------GGCUCCUUCCCCagaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 29186 | 0.68 | 0.517753 |
Target: 5'- -cGCCCGCuCUCGAGGAaaaAGGGG-Cg-- -3' miRNA: 3'- aaUGGGCG-GGGCUCCU---UCCCCaGaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 29243 | 0.68 | 0.566501 |
Target: 5'- -gGCCgCGCCCCGAGGGacAGGGaa-UCc -3' miRNA: 3'- aaUGG-GCGGGGCUCCU--UCCCcagAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 30682 | 0.66 | 0.66646 |
Target: 5'- -aGCCUcCCCCGGcGGGcggGGGGGUgUCg -3' miRNA: 3'- aaUGGGcGGGGCU-CCU---UCCCCAgAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 33229 | 0.68 | 0.54683 |
Target: 5'- ----gCGCCCCGgcgggcGGGAGGGGGUC-Cg -3' miRNA: 3'- aauggGCGGGGC------UCCUUCCCCAGaGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 33887 | 0.75 | 0.233427 |
Target: 5'- -gACCC-CCCCGGGGGcGGGGGcCUCg -3' miRNA: 3'- aaUGGGcGGGGCUCCU-UCCCCaGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 34028 | 0.7 | 0.456184 |
Target: 5'- -gGCCCuCCCCGccGGGAAGGGGacccggcccucuucgUCUCc -3' miRNA: 3'- aaUGGGcGGGGC--UCCUUCCCC---------------AGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 34123 | 0.7 | 0.44363 |
Target: 5'- -cACCCGCCCCcccaccGGgcGGGGUC-Cg -3' miRNA: 3'- aaUGGGCGGGGcu----CCuuCCCCAGaGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 38593 | 0.74 | 0.254763 |
Target: 5'- ---gCCGCCCCGGGGAcggcgaggaggacgAGGGGcUCUCc -3' miRNA: 3'- aaugGGCGGGGCUCCU--------------UCCCC-AGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 38915 | 0.67 | 0.616343 |
Target: 5'- -gGCCCGCgCCuCGuGGAccAGGaGGUCUUc -3' miRNA: 3'- aaUGGGCG-GG-GCuCCU--UCC-CCAGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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