Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29575 | 3' | -55.4 | NC_006151.1 | + | 11009 | 0.79 | 0.270104 |
Target: 5'- cCCGgc-UCGCccGCCCGCUCGCUCGCc -3' miRNA: 3'- -GGUagcAGUGuaCGGGCGAGCGAGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 75645 | 0.77 | 0.380605 |
Target: 5'- gCCGUCGUCGgGgGCCgGCUCGC-CGCc -3' miRNA: 3'- -GGUAGCAGUgUaCGGgCGAGCGaGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 140327 | 0.75 | 0.44066 |
Target: 5'- gCAUCGUCACcuacacacuggugAUGCUgGCUCGCaUCGCc -3' miRNA: 3'- gGUAGCAGUG-------------UACGGgCGAGCG-AGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 84973 | 0.74 | 0.537307 |
Target: 5'- gCCAcgcUCGUCGCGgagcGCCCGCagGuCUCGCg -3' miRNA: 3'- -GGU---AGCAGUGUa---CGGGCGagC-GAGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 91466 | 0.73 | 0.557378 |
Target: 5'- gCCAggGUCACGUaGaCCUGCUCGC-CGCg -3' miRNA: 3'- -GGUagCAGUGUA-C-GGGCGAGCGaGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 86299 | 0.72 | 0.606301 |
Target: 5'- gCGUCGUCAacUGCCCGCagcugggggccgUGCUCGCc -3' miRNA: 3'- gGUAGCAGUguACGGGCGa-----------GCGAGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 71005 | 0.72 | 0.608355 |
Target: 5'- gCCAUCGUgggCGcCAUGCgCCGCgaGCUCGCg -3' miRNA: 3'- -GGUAGCA---GU-GUACG-GGCGagCGAGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 78995 | 0.72 | 0.628921 |
Target: 5'- cCCGUC--CACAacacccCCCGCUCGCUCGCc -3' miRNA: 3'- -GGUAGcaGUGUac----GGGCGAGCGAGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 97837 | 0.72 | 0.639212 |
Target: 5'- -gGUCGUCACGUGCgCGCgcagCGCgucgucCGCg -3' miRNA: 3'- ggUAGCAGUGUACGgGCGa---GCGa-----GUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 128588 | 0.72 | 0.649497 |
Target: 5'- aCAUCGUCucGCGcgGCCCGCgCGC-CACc -3' miRNA: 3'- gGUAGCAG--UGUa-CGGGCGaGCGaGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 127553 | 0.71 | 0.680234 |
Target: 5'- gCGUCGUCGuCGUGgCCGCcgccggcgccUCGUUCGCc -3' miRNA: 3'- gGUAGCAGU-GUACgGGCG----------AGCGAGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 136619 | 0.7 | 0.720614 |
Target: 5'- gCCGUCaacGUCACGgaccccgcggcGCCCGUggggCGCUCGCc -3' miRNA: 3'- -GGUAG---CAGUGUa----------CGGGCGa---GCGAGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 60630 | 0.7 | 0.740381 |
Target: 5'- gCCGUCGUCGgggcggggcucCcgGCCCGCgccgcguccUCGCUCcCg -3' miRNA: 3'- -GGUAGCAGU-----------GuaCGGGCG---------AGCGAGuG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 84352 | 0.7 | 0.750125 |
Target: 5'- ---aCGUCGCcgGCCCGCggcggugaUCGCgaUCGCg -3' miRNA: 3'- gguaGCAGUGuaCGGGCG--------AGCG--AGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 95834 | 0.69 | 0.769291 |
Target: 5'- aCA-CG-CACAcGCCCGUggggCGCUCGCu -3' miRNA: 3'- gGUaGCaGUGUaCGGGCGa---GCGAGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 81501 | 0.69 | 0.787962 |
Target: 5'- gCCGUCGgcgagagCGCG-GCCCGCgugaGCUCGg -3' miRNA: 3'- -GGUAGCa------GUGUaCGGGCGag--CGAGUg -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 97556 | 0.69 | 0.787962 |
Target: 5'- gCCGUCGUCGCc-GCCgaggcgcaGCUCGCggucCACg -3' miRNA: 3'- -GGUAGCAGUGuaCGGg-------CGAGCGa---GUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 39521 | 0.69 | 0.797089 |
Target: 5'- uCCAUCGUgGgcCcgGCCUGCUuCGCcCGCg -3' miRNA: 3'- -GGUAGCAgU--GuaCGGGCGA-GCGaGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 121874 | 0.69 | 0.797089 |
Target: 5'- aCGcCGcUCACGUGCgCGCUgcgccuggCGCUCGCg -3' miRNA: 3'- gGUaGC-AGUGUACGgGCGA--------GCGAGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 67975 | 0.69 | 0.806066 |
Target: 5'- aCCAcgcaGUCGCGgcgGCCCGCcggCGC-CGCg -3' miRNA: 3'- -GGUag--CAGUGUa--CGGGCGa--GCGaGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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