miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 3' -55.4 NC_006151.1 + 11009 0.79 0.270104
Target:  5'- cCCGgc-UCGCccGCCCGCUCGCUCGCc -3'
miRNA:   3'- -GGUagcAGUGuaCGGGCGAGCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 39521 0.69 0.797089
Target:  5'- uCCAUCGUgGgcCcgGCCUGCUuCGCcCGCg -3'
miRNA:   3'- -GGUAGCAgU--GuaCGGGCGA-GCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 43068 0.67 0.871475
Target:  5'- aCCAUCGccaccgcCGCGUGUCCGCucccccccgugUCGCgCGCu -3'
miRNA:   3'- -GGUAGCa------GUGUACGGGCG-----------AGCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 49385 0.66 0.905546
Target:  5'- gCCAUcCGUCGCcgcugGCCCGCaCGCccuUCAg -3'
miRNA:   3'- -GGUA-GCAGUGua---CGGGCGaGCG---AGUg -5'
29575 3' -55.4 NC_006151.1 + 50442 0.68 0.832007
Target:  5'- gCCggCGgccugggCACc-GCCCGCgggCGCUCGCg -3'
miRNA:   3'- -GGuaGCa------GUGuaCGGGCGa--GCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 51628 0.66 0.905546
Target:  5'- gCCGUCG-CGCAgcgcgGCCaauauauGCUCGCUgAUg -3'
miRNA:   3'- -GGUAGCaGUGUa----CGGg------CGAGCGAgUG- -5'
29575 3' -55.4 NC_006151.1 + 54804 0.67 0.878742
Target:  5'- cCCGgcacCGgCGCGUGCUgGCgcgcgacgCGCUCACg -3'
miRNA:   3'- -GGUa---GCaGUGUACGGgCGa-------GCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 60630 0.7 0.740381
Target:  5'- gCCGUCGUCGgggcggggcucCcgGCCCGCgccgcguccUCGCUCcCg -3'
miRNA:   3'- -GGUAGCAGU-----------GuaCGGGCG---------AGCGAGuG- -5'
29575 3' -55.4 NC_006151.1 + 63874 0.66 0.905546
Target:  5'- aCCcgCGcaGCGUGUCCGCgucggggCGCUCGa -3'
miRNA:   3'- -GGuaGCagUGUACGGGCGa------GCGAGUg -5'
29575 3' -55.4 NC_006151.1 + 67975 0.69 0.806066
Target:  5'- aCCAcgcaGUCGCGgcgGCCCGCcggCGC-CGCg -3'
miRNA:   3'- -GGUag--CAGUGUa--CGGGCGa--GCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 68941 0.66 0.928569
Target:  5'- -gAUCuggCGCAUGCgCgGCUCGCggcgCACg -3'
miRNA:   3'- ggUAGca-GUGUACG-GgCGAGCGa---GUG- -5'
29575 3' -55.4 NC_006151.1 + 71005 0.72 0.608355
Target:  5'- gCCAUCGUgggCGcCAUGCgCCGCgaGCUCGCg -3'
miRNA:   3'- -GGUAGCA---GU-GUACG-GGCGagCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 73973 0.68 0.814884
Target:  5'- gCCAcCGUgGcCAUGCCCGCguccggCGC-CACc -3'
miRNA:   3'- -GGUaGCAgU-GUACGGGCGa-----GCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 75645 0.77 0.380605
Target:  5'- gCCGUCGUCGgGgGCCgGCUCGC-CGCc -3'
miRNA:   3'- -GGUAGCAGUgUaCGGgCGAGCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 77414 0.67 0.871475
Target:  5'- gCAUCGUgucCGUGCaCCGg-CGCUCGCg -3'
miRNA:   3'- gGUAGCAgu-GUACG-GGCgaGCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 78995 0.72 0.628921
Target:  5'- cCCGUC--CACAacacccCCCGCUCGCUCGCc -3'
miRNA:   3'- -GGUAGcaGUGUac----GGGCGAGCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 81501 0.69 0.787962
Target:  5'- gCCGUCGgcgagagCGCG-GCCCGCgugaGCUCGg -3'
miRNA:   3'- -GGUAGCa------GUGUaCGGGCGag--CGAGUg -5'
29575 3' -55.4 NC_006151.1 + 84352 0.7 0.750125
Target:  5'- ---aCGUCGCcgGCCCGCggcggugaUCGCgaUCGCg -3'
miRNA:   3'- gguaGCAGUGuaCGGGCG--------AGCG--AGUG- -5'
29575 3' -55.4 NC_006151.1 + 84973 0.74 0.537307
Target:  5'- gCCAcgcUCGUCGCGgagcGCCCGCagGuCUCGCg -3'
miRNA:   3'- -GGU---AGCAGUGUa---CGGGCGagC-GAGUG- -5'
29575 3' -55.4 NC_006151.1 + 86299 0.72 0.606301
Target:  5'- gCGUCGUCAacUGCCCGCagcugggggccgUGCUCGCc -3'
miRNA:   3'- gGUAGCAGUguACGGGCGa-----------GCGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.