miRNA display CGI


Results 21 - 40 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 5090 0.77 0.146326
Target:  5'- gCCGCGGCgGGCGccgGCGGagacGGuGGCGGCCc -3'
miRNA:   3'- -GGCGCUGgCCGC---UGCUa---CC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 5123 0.67 0.559605
Target:  5'- cCgGCG-CgGGCGA--GUGGGGCgccgGGCCg -3'
miRNA:   3'- -GgCGCuGgCCGCUgcUACCCCG----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 5241 0.74 0.228844
Target:  5'- gCCGCGcGgCGGCGGCGGgggcccggGGGGCGGa- -3'
miRNA:   3'- -GGCGC-UgGCCGCUGCUa-------CCCCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 5332 0.72 0.305095
Target:  5'- gCCGCGGCC-GCGGCGGaGGGcgcccucuccggcGCGGCg -3'
miRNA:   3'- -GGCGCUGGcCGCUGCUaCCC-------------CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 5443 0.72 0.303118
Target:  5'- gCCGCGGgcgacggucucgaCGGCGACGGUGGuGGUGGa- -3'
miRNA:   3'- -GGCGCUg------------GCCGCUGCUACC-CCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 5602 0.72 0.31921
Target:  5'- aCCGCGGuccccuCCGGCGGag--GGGGCGccGCCg -3'
miRNA:   3'- -GGCGCU------GGCCGCUgcuaCCCCGC--CGG- -5'
29575 5' -62.9 NC_006151.1 + 5645 0.72 0.326102
Target:  5'- gCCGaGACCGGCccGGCGgcGGGGgaGGCUg -3'
miRNA:   3'- -GGCgCUGGCCG--CUGCuaCCCCg-CCGG- -5'
29575 5' -62.9 NC_006151.1 + 5721 0.71 0.377403
Target:  5'- gCUGUG-CUGGUGGCGccGGGGUccgaGGCCg -3'
miRNA:   3'- -GGCGCuGGCCGCUGCuaCCCCG----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 5852 0.68 0.513093
Target:  5'- gCUGCGGagGGgGACGAgcgcccGGGGCcGCCg -3'
miRNA:   3'- -GGCGCUggCCgCUGCUa-----CCCCGcCGG- -5'
29575 5' -62.9 NC_006151.1 + 5915 0.67 0.597637
Target:  5'- gCCGgGGUCGGCGGCc--GGGGCccggagccGGCCc -3'
miRNA:   3'- -GGCgCUGGCCGCUGcuaCCCCG--------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 6101 0.69 0.485954
Target:  5'- gCUGCugGGCCGaagGAgGAcGGGGCGGCCu -3'
miRNA:   3'- -GGCG--CUGGCcg-CUgCUaCCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 6142 0.73 0.262105
Target:  5'- gCCGCGGCC-GCGAgGAc--GGCGGCCu -3'
miRNA:   3'- -GGCGCUGGcCGCUgCUaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 6418 0.68 0.494927
Target:  5'- -aGCGGgCGGCGGagaaGAaGGaggaaGGCGGCCg -3'
miRNA:   3'- ggCGCUgGCCGCUg---CUaCC-----CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 7728 0.73 0.264457
Target:  5'- aCCgGCGACCGgacccgaaccgggaaGCGACGccGGGGCGGg- -3'
miRNA:   3'- -GG-CGCUGGC---------------CGCUGCuaCCCCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 7990 0.68 0.549257
Target:  5'- uCCGCGguACCucgGGCgGGCGGgagGGGGCgcgagaccggcucGGCCu -3'
miRNA:   3'- -GGCGC--UGG---CCG-CUGCUa--CCCCG-------------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 8078 0.7 0.41723
Target:  5'- -gGCGACgGGgCGugGcgGGGcGUGGCa -3'
miRNA:   3'- ggCGCUGgCC-GCugCuaCCC-CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 8570 0.68 0.503975
Target:  5'- gUGCGugUGG-GugGGUGGGuGUgagGGCCg -3'
miRNA:   3'- gGCGCugGCCgCugCUACCC-CG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 8666 0.68 0.494927
Target:  5'- -gGCGAuaCCGGUaccGACGGUGguggccgggcGGGCGGUCu -3'
miRNA:   3'- ggCGCU--GGCCG---CUGCUAC----------CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 9052 0.68 0.540834
Target:  5'- cCCGCGugcuCCGGgGGCGccGGc-CGGCCa -3'
miRNA:   3'- -GGCGCu---GGCCgCUGCuaCCccGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 9487 0.74 0.250601
Target:  5'- cCCGCGGCCgcGGCGugGGagagcGGGGCGuGUg -3'
miRNA:   3'- -GGCGCUGG--CCGCugCUa----CCCCGC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.