miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 22 0.69 0.485954
Target:  5'- gCCGCGAaaaaaGGgGGCGGggcuuaaaggGGGGgGGCUa -3'
miRNA:   3'- -GGCGCUgg---CCgCUGCUa---------CCCCgCCGG- -5'
29575 5' -62.9 NC_006151.1 + 640 0.67 0.597637
Target:  5'- aCGUGacGCCGGCuuCcg-GGGcGCGGCCg -3'
miRNA:   3'- gGCGC--UGGCCGcuGcuaCCC-CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 806 0.67 0.588081
Target:  5'- cCCGcCGGCCaaucGGUGGCaGcgGGGGaGGCUg -3'
miRNA:   3'- -GGC-GCUGG----CCGCUG-CuaCCCCgCCGG- -5'
29575 5' -62.9 NC_006151.1 + 2201 0.67 0.607215
Target:  5'- cCCGCgGGCCGGUgggucuccacGGCGcccccGGcGGCGGCg -3'
miRNA:   3'- -GGCG-CUGGCCG----------CUGCua---CC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 2294 0.78 0.139424
Target:  5'- cCCGCGG-CGGCGACGGcgcccggggUcagcaccagcGGGGCGGCCu -3'
miRNA:   3'- -GGCGCUgGCCGCUGCU---------A----------CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 2404 0.71 0.36975
Target:  5'- gCCGCGGagcUCGGCGAgGccccGGCGGCCg -3'
miRNA:   3'- -GGCGCU---GGCCGCUgCuaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 2605 0.66 0.664804
Target:  5'- gCGCGG-CGGCaGCGGgaccGGGGUccggGGCCc -3'
miRNA:   3'- gGCGCUgGCCGcUGCUa---CCCCG----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 2797 0.69 0.477059
Target:  5'- cCCG-GGCCaGCGcACGGcgcacuGGGCGGCCg -3'
miRNA:   3'- -GGCgCUGGcCGC-UGCUac----CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 3057 0.71 0.384381
Target:  5'- gUGCGAguCCGGCGugcagagGCGGUGGgcgaaGGCGGCg -3'
miRNA:   3'- gGCGCU--GGCCGC-------UGCUACC-----CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 3267 0.81 0.087142
Target:  5'- gCCGCGG-CGcGCGGCGAUGugcgccaGGGCGGCCg -3'
miRNA:   3'- -GGCGCUgGC-CGCUGCUAC-------CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 3736 0.74 0.245006
Target:  5'- uCCG-GGCCGGCGGCGG-GGGaGCuGGCg -3'
miRNA:   3'- -GGCgCUGGCCGCUGCUaCCC-CG-CCGg -5'
29575 5' -62.9 NC_006151.1 + 3880 0.69 0.459516
Target:  5'- gCCGCcGCCGGCGcCGGcgcUGGGacgacgaGGCCg -3'
miRNA:   3'- -GGCGcUGGCCGCuGCU---ACCCcg-----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 3993 0.68 0.522279
Target:  5'- gCCGCGGCCacguuggccggGGCGAaGA-GGGccGCGGCg -3'
miRNA:   3'- -GGCGCUGG-----------CCGCUgCUaCCC--CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 4080 0.68 0.540834
Target:  5'- aCCaGCGgcgccacgguGCgGGCGACGA-GGGcgacagaguccGCGGCCu -3'
miRNA:   3'- -GG-CGC----------UGgCCGCUGCUaCCC-----------CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 4180 0.73 0.273428
Target:  5'- gCGCGGCCgucaccuccucgaGGCaGGCGGgcccGaGGGCGGCCg -3'
miRNA:   3'- gGCGCUGG-------------CCG-CUGCUa---C-CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 4323 0.71 0.36975
Target:  5'- aCGCGGCCgggcugcgcGGCGGCGAa--GGCGGCg -3'
miRNA:   3'- gGCGCUGG---------CCGCUGCUaccCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 4512 0.75 0.218576
Target:  5'- aCCGCGugCGGCagggcccagaGCGGguccuGGGCGGCCa -3'
miRNA:   3'- -GGCGCugGCCGc---------UGCUac---CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 4584 0.71 0.352556
Target:  5'- aCGCuGCCGGUGAUGAaggagccguggccgUGGGGCGcGUg -3'
miRNA:   3'- gGCGcUGGCCGCUGCU--------------ACCCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 4794 0.68 0.531527
Target:  5'- gCCGCGGCgCGGUaGCGGgcc-GCGGCCu -3'
miRNA:   3'- -GGCGCUG-GCCGcUGCUacccCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 5027 0.68 0.503975
Target:  5'- uCCGgGGCCGG-GGCc--GGGGaGGCCg -3'
miRNA:   3'- -GGCgCUGGCCgCUGcuaCCCCgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.