miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 90719 0.84 0.054132
Target:  5'- cCCGCaGGCggCGGCGACGGUGGcGGCGGCg -3'
miRNA:   3'- -GGCG-CUG--GCCGCUGCUACC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 121303 0.83 0.063021
Target:  5'- aCCGCGACgGGCGcuggaGCG-UGGaGGCGGCCg -3'
miRNA:   3'- -GGCGCUGgCCGC-----UGCuACC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 130875 0.83 0.064634
Target:  5'- aCCGCaguGGgCGGCGGCGGUGGaggcGGCGGCCg -3'
miRNA:   3'- -GGCG---CUgGCCGCUGCUACC----CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 103807 0.82 0.075178
Target:  5'- gCCGCGcugUCGGCGGCcGUGGcGGCGGCCg -3'
miRNA:   3'- -GGCGCu--GGCCGCUGcUACC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 3267 0.81 0.087142
Target:  5'- gCCGCGG-CGcGCGGCGAUGugcgccaGGGCGGCCg -3'
miRNA:   3'- -GGCGCUgGC-CGCUGCUAC-------CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 21390 0.81 0.089565
Target:  5'- aCGaCGGCCGGCGggGCGAaGGGGCGGUg -3'
miRNA:   3'- gGC-GCUGGCCGC--UGCUaCCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 105676 0.8 0.098924
Target:  5'- aCGCGGCCuacGGCGGCGcgGGGccgacgccggcGCGGCCg -3'
miRNA:   3'- gGCGCUGG---CCGCUGCuaCCC-----------CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 32847 0.8 0.103944
Target:  5'- -gGgGGCCGGCGGgGAUGGGGaagaaGGCCc -3'
miRNA:   3'- ggCgCUGGCCGCUgCUACCCCg----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 19292 0.79 0.114709
Target:  5'- aCCGgGGCCaGCGGCGc--GGGCGGCCg -3'
miRNA:   3'- -GGCgCUGGcCGCUGCuacCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 133350 0.79 0.123458
Target:  5'- uCCGCGG-CGGCGGugguggugguggUGGUGGuGGCGGCCg -3'
miRNA:   3'- -GGCGCUgGCCGCU------------GCUACC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 17113 0.78 0.126509
Target:  5'- gCCGgGGgcuCCGGCGGCGGUgcugcgGGaGGCGGCCa -3'
miRNA:   3'- -GGCgCU---GGCCGCUGCUA------CC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 97362 0.78 0.126509
Target:  5'- gCCGCGG-CGGCGGCGGgcgcggcgGGGGCgucGGCCu -3'
miRNA:   3'- -GGCGCUgGCCGCUGCUa-------CCCCG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 92166 0.78 0.132822
Target:  5'- gCCGCGGCCGuGCGcgccgacgGCGAcGGGGCcGCCg -3'
miRNA:   3'- -GGCGCUGGC-CGC--------UGCUaCCCCGcCGG- -5'
29575 5' -62.9 NC_006151.1 + 40530 0.78 0.135756
Target:  5'- gCUGCGGCggcggcggaggUGGCGGCGGUGGuggaagcggcggcGGCGGCCg -3'
miRNA:   3'- -GGCGCUG-----------GCCGCUGCUACC-------------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 99561 0.78 0.136086
Target:  5'- gCGCGGCgCGcGCGGCGcugcugcgcgagGUGGcGGCGGCCg -3'
miRNA:   3'- gGCGCUG-GC-CGCUGC------------UACC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 2294 0.78 0.139424
Target:  5'- cCCGCGG-CGGCGACGGcgcccggggUcagcaccagcGGGGCGGCCu -3'
miRNA:   3'- -GGCGCUgGCCGCUGCU---------A----------CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 5090 0.77 0.146326
Target:  5'- gCCGCGGCgGGCGccgGCGGagacGGuGGCGGCCc -3'
miRNA:   3'- -GGCGCUGgCCGC---UGCUa---CC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 71621 0.77 0.146326
Target:  5'- aCCGCGGCCuucucgccgggGGgGACGGUcGGGG-GGCCg -3'
miRNA:   3'- -GGCGCUGG-----------CCgCUGCUA-CCCCgCCGG- -5'
29575 5' -62.9 NC_006151.1 + 141406 0.77 0.149892
Target:  5'- gCGUGuCCGGCGAuCGGUgcGGGcGCGGCCc -3'
miRNA:   3'- gGCGCuGGCCGCU-GCUA--CCC-CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 45088 0.77 0.149892
Target:  5'- aCCGCgcgGugUGGCGuCGAUGGGGuCGuGCCg -3'
miRNA:   3'- -GGCG---CugGCCGCuGCUACCCC-GC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.