miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2958 5' -53.2 NC_001493.1 + 19421 0.66 0.944865
Target:  5'- --aUCGACuuuGAGAUGGCgcaCCCGCUcGAc -3'
miRNA:   3'- aaaAGUUG---CUCUGCCGag-GGGUGA-CU- -5'
2958 5' -53.2 NC_001493.1 + 46823 0.66 0.942051
Target:  5'- --cUCggUGAGACgGGCUaucuuccuggcgaaCCCGCUGGu -3'
miRNA:   3'- aaaAGuuGCUCUG-CCGAg-------------GGGUGACU- -5'
2958 5' -53.2 NC_001493.1 + 120426 0.67 0.924365
Target:  5'- --cUCGAuCGAGAUGGCauUCUCCACg-- -3'
miRNA:   3'- aaaAGUU-GCUCUGCCG--AGGGGUGacu -5'
2958 5' -53.2 NC_001493.1 + 4872 0.67 0.924365
Target:  5'- --cUCGAuCGAGAUGGCauUCUCCACg-- -3'
miRNA:   3'- aaaAGUU-GCUCUGCCG--AGGGGUGacu -5'
2958 5' -53.2 NC_001493.1 + 9149 0.67 0.918597
Target:  5'- -gUUCugaAACGGGACGGCguaCCCCG-UGGg -3'
miRNA:   3'- aaAAG---UUGCUCUGCCGa--GGGGUgACU- -5'
2958 5' -53.2 NC_001493.1 + 124703 0.67 0.918597
Target:  5'- -gUUCugaAACGGGACGGCguaCCCCG-UGGg -3'
miRNA:   3'- aaAAG---UUGCUCUGCCGa--GGGGUgACU- -5'
2958 5' -53.2 NC_001493.1 + 89213 0.67 0.918597
Target:  5'- --gUCAugGAGcGCGGCguccUCCCCAUg-- -3'
miRNA:   3'- aaaAGUugCUC-UGCCG----AGGGGUGacu -5'
2958 5' -53.2 NC_001493.1 + 21667 0.67 0.918597
Target:  5'- --aUCAuguacCGAGA-GGUUcCCCCGCUGAu -3'
miRNA:   3'- aaaAGUu----GCUCUgCCGA-GGGGUGACU- -5'
2958 5' -53.2 NC_001493.1 + 76913 0.67 0.911956
Target:  5'- aUUUCAugGAuuugauuuucaauGGCGGUgCCCUugUGAa -3'
miRNA:   3'- aAAAGUugCU-------------CUGCCGaGGGGugACU- -5'
2958 5' -53.2 NC_001493.1 + 102041 0.68 0.89976
Target:  5'- ---gCGAUGAGAUGG-UCCCCGCg-- -3'
miRNA:   3'- aaaaGUUGCUCUGCCgAGGGGUGacu -5'
2958 5' -53.2 NC_001493.1 + 4631 0.68 0.892978
Target:  5'- --cUCGACGAu-CGGCUCuCCCGCa-- -3'
miRNA:   3'- aaaAGUUGCUcuGCCGAG-GGGUGacu -5'
2958 5' -53.2 NC_001493.1 + 120185 0.68 0.892978
Target:  5'- --cUCGACGAu-CGGCUCuCCCGCa-- -3'
miRNA:   3'- aaaAGUUGCUcuGCCGAG-GGGUGacu -5'
2958 5' -53.2 NC_001493.1 + 118278 0.68 0.892978
Target:  5'- -cUUCAACGAcGACGGUaCCacccaaCGCUGGg -3'
miRNA:   3'- aaAAGUUGCU-CUGCCGaGGg-----GUGACU- -5'
2958 5' -53.2 NC_001493.1 + 28425 0.68 0.885949
Target:  5'- ----gAGCGAGGCGGCgCUCCGCg-- -3'
miRNA:   3'- aaaagUUGCUCUGCCGaGGGGUGacu -5'
2958 5' -53.2 NC_001493.1 + 2724 0.71 0.725014
Target:  5'- -cUUCAACGAcGACGGUaccaUCCCaaCGCUGGg -3'
miRNA:   3'- aaAAGUUGCU-CUGCCG----AGGG--GUGACU- -5'
2958 5' -53.2 NC_001493.1 + 93662 0.73 0.65172
Target:  5'- ---aCGACGGGA-GGCUCggCCCACUGGa -3'
miRNA:   3'- aaaaGUUGCUCUgCCGAG--GGGUGACU- -5'
2958 5' -53.2 NC_001493.1 + 47487 0.73 0.641106
Target:  5'- -cUUCAACGGGAUGGUcuUCCCCGuCUa- -3'
miRNA:   3'- aaAAGUUGCUCUGCCG--AGGGGU-GAcu -5'
2958 5' -53.2 NC_001493.1 + 86958 0.73 0.630483
Target:  5'- uUUUUCAcGCGGGugGGUUUCCCGCg-- -3'
miRNA:   3'- -AAAAGU-UGCUCugCCGAGGGGUGacu -5'
2958 5' -53.2 NC_001493.1 + 82994 1.07 0.005333
Target:  5'- aUUUUCAACGAGACGGCUCCCCACUGAg -3'
miRNA:   3'- -AAAAGUUGCUCUGCCGAGGGGUGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.