miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 141629 0.7 0.642352
Target:  5'- gGGCGGGucgcuGCCgCGGCGGCGCG-GCGg -3'
miRNA:   3'- -CCGCUCu----UGGaGCUGCCGUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 138619 0.7 0.642352
Target:  5'- cGGCGAGGacGCCgcCGGgGGCGCGC-CGg -3'
miRNA:   3'- -CCGCUCU--UGGa-GCUgCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 132028 0.7 0.652583
Target:  5'- uGCGAGAGgUagcCGGCGGCGCGCGgCAg -3'
miRNA:   3'- cCGCUCUUgGa--GCUGCCGUGCGU-GUa -5'
29581 5' -56.5 NC_006151.1 + 105577 0.7 0.652583
Target:  5'- uGGCGGccGCCuUCGAC-GCGCGCGCGg -3'
miRNA:   3'- -CCGCUcuUGG-AGCUGcCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 103665 0.7 0.652583
Target:  5'- cGGCG-GAGaa--GGCGGCGCGCGCGg -3'
miRNA:   3'- -CCGCuCUUggagCUGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 61286 0.7 0.652583
Target:  5'- uGCGGGGACggaagCUCGACGGgCGCGuCGCGc -3'
miRNA:   3'- cCGCUCUUG-----GAGCUGCC-GUGC-GUGUa -5'
29581 5' -56.5 NC_006151.1 + 130938 0.7 0.652583
Target:  5'- gGGCGGGGGCggCGGgGGguCGCGCGg -3'
miRNA:   3'- -CCGCUCUUGgaGCUgCCguGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 31619 0.7 0.652583
Target:  5'- gGGCGGGGauGCCgCGcCGGCACgaGCGCAc -3'
miRNA:   3'- -CCGCUCU--UGGaGCuGCCGUG--CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 53779 0.7 0.652583
Target:  5'- uGGCGuAGAcguUCUgGGCGGCgACGCGCGUc -3'
miRNA:   3'- -CCGC-UCUu--GGAgCUGCCG-UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 101941 0.7 0.67197
Target:  5'- cGGCGAGccaggagGACCUgaGCaGCACGCACAc -3'
miRNA:   3'- -CCGCUC-------UUGGAgcUGcCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 99899 0.7 0.672987
Target:  5'- uGGCGcAGGugCUgaCGugGGCGCGCGa-- -3'
miRNA:   3'- -CCGC-UCUugGA--GCugCCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 97277 0.7 0.672987
Target:  5'- gGGC-AGcGCCUCGGCGGCGgGCGu-- -3'
miRNA:   3'- -CCGcUCuUGGAGCUGCCGUgCGUgua -5'
29581 5' -56.5 NC_006151.1 + 23250 0.7 0.683144
Target:  5'- -uCGGGGGCCUCGGgGGCAuCGC-CGUg -3'
miRNA:   3'- ccGCUCUUGGAGCUgCCGU-GCGuGUA- -5'
29581 5' -56.5 NC_006151.1 + 97182 0.7 0.683144
Target:  5'- cGGCGcacGAcGCgCUCGACGGUgccgagGCGCACGUa -3'
miRNA:   3'- -CCGCu--CU-UG-GAGCUGCCG------UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 119034 0.7 0.683144
Target:  5'- aGGCGGGcGCCaaggaCGGCGGCGC-CGCGg -3'
miRNA:   3'- -CCGCUCuUGGa----GCUGCCGUGcGUGUa -5'
29581 5' -56.5 NC_006151.1 + 94002 0.7 0.692249
Target:  5'- cGGCG-GAugGCCUCGucccgcaGCGccGCGCGCACGUa -3'
miRNA:   3'- -CCGCuCU--UGGAGC-------UGC--CGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 31740 0.7 0.693258
Target:  5'- aGGCGcccgcgccggGGAcgcGCCUgCGGCGGCGgGCGCGc -3'
miRNA:   3'- -CCGC----------UCU---UGGA-GCUGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 33898 0.69 0.699303
Target:  5'- gGGCGGGGGCCUCGcgccuccgcguccgGCGGgcggaucgaggccCGCGCGCc- -3'
miRNA:   3'- -CCGCUCUUGGAGC--------------UGCC-------------GUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 106702 0.69 0.702318
Target:  5'- cGGCGAccuguacGcGCC-CGugGGCACGgGCAUg -3'
miRNA:   3'- -CCGCU-------CuUGGaGCugCCGUGCgUGUA- -5'
29581 5' -56.5 NC_006151.1 + 47258 0.69 0.703322
Target:  5'- uGGCGAGAuggACCgCucCGGCGCGCAgCGUc -3'
miRNA:   3'- -CCGCUCU---UGGaGcuGCCGUGCGU-GUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.