miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 88935 0.72 0.569934
Target:  5'- cGGCGGuagaagcGGACCUCGAaggucucccCGGCGCGCGgGa -3'
miRNA:   3'- -CCGCU-------CUUGGAGCU---------GCCGUGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 133476 0.72 0.578029
Target:  5'- cGCGAGGcggccgcgggcgucACCUUGGCGGCGCgggggGCGCGg -3'
miRNA:   3'- cCGCUCU--------------UGGAGCUGCCGUG-----CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 70624 0.72 0.581071
Target:  5'- --gGAGAuCCUCGGCGGCgccguggccGCGCGCGa -3'
miRNA:   3'- ccgCUCUuGGAGCUGCCG---------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 120816 0.72 0.581071
Target:  5'- cGCGAGGugCUgGACGcGC-CGCGCGa -3'
miRNA:   3'- cCGCUCUugGAgCUGC-CGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 78535 0.72 0.581071
Target:  5'- cGGCGGGGGCCUCGcCGccgacgacgaaGCACGCcCGg -3'
miRNA:   3'- -CCGCUCUUGGAGCuGC-----------CGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 141489 0.72 0.581071
Target:  5'- -cCGAGAGCCUCcGCGGCgACGgGCGUc -3'
miRNA:   3'- ccGCUCUUGGAGcUGCCG-UGCgUGUA- -5'
29581 5' -56.5 NC_006151.1 + 119113 0.71 0.601427
Target:  5'- cGUGAGccgcgcggccGGCCUCGugGGgGCGCugGUg -3'
miRNA:   3'- cCGCUC----------UUGGAGCugCCgUGCGugUA- -5'
29581 5' -56.5 NC_006151.1 + 133657 0.71 0.611643
Target:  5'- uGCGAGAggcgcuGCCggcgCGGCGGCGCGCc--- -3'
miRNA:   3'- cCGCUCU------UGGa---GCUGCCGUGCGugua -5'
29581 5' -56.5 NC_006151.1 + 3386 0.71 0.611643
Target:  5'- cGGCGAGGgccGCCUCGGagGGC-CGCgGCGUg -3'
miRNA:   3'- -CCGCUCU---UGGAGCUg-CCGuGCG-UGUA- -5'
29581 5' -56.5 NC_006151.1 + 132089 0.71 0.611643
Target:  5'- cGGCGccguccuCCUCGAugaggcCGGCGCGCACGa -3'
miRNA:   3'- -CCGCucuu---GGAGCU------GCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 75589 0.71 0.620851
Target:  5'- aGGCGGucGCCgacgacgacgaggUCGGCGcGCACGCGCGc -3'
miRNA:   3'- -CCGCUcuUGG-------------AGCUGC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 18313 0.71 0.621874
Target:  5'- aGCGGGGcGCCUCcuCGGgGCGCACGUa -3'
miRNA:   3'- cCGCUCU-UGGAGcuGCCgUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 111500 0.71 0.621874
Target:  5'- -aCGAGAGCUgcaCGcGCGGCAUGCGCAc -3'
miRNA:   3'- ccGCUCUUGGa--GC-UGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 57206 0.71 0.625969
Target:  5'- aGGCGAaGGCCcgcUCGacgaggccgucgcagGCGGCGCGCGCGg -3'
miRNA:   3'- -CCGCUcUUGG---AGC---------------UGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 54927 0.71 0.625969
Target:  5'- cGGCGAGGugCUgGcgugccacgcgcugcGCGaGCACGCGCGc -3'
miRNA:   3'- -CCGCUCUugGAgC---------------UGC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 138193 0.71 0.631089
Target:  5'- uGGCGcccgugcugcGGcACCUCGACgcgcacuucaacgGGCGCGCGCAc -3'
miRNA:   3'- -CCGC----------UCuUGGAGCUG-------------CCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 84732 0.71 0.632113
Target:  5'- aGGCGcucguGGugCUCGAggagaCGGCGCGCGCc- -3'
miRNA:   3'- -CCGCu----CUugGAGCU-----GCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 68318 0.7 0.642352
Target:  5'- cGGCGAGGgcggcguagACCUUGACGcGCGagucggaGCGCAg -3'
miRNA:   3'- -CCGCUCU---------UGGAGCUGC-CGUg------CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 138619 0.7 0.642352
Target:  5'- cGGCGAGGacGCCgcCGGgGGCGCGC-CGg -3'
miRNA:   3'- -CCGCUCU--UGGa-GCUgCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 141629 0.7 0.642352
Target:  5'- gGGCGGGucgcuGCCgCGGCGGCGCG-GCGg -3'
miRNA:   3'- -CCGCUCu----UGGaGCUGCCGUGCgUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.