miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 72919 0.66 0.865403
Target:  5'- uGGCGAccGCCUCGGCGG-GCGUg--- -3'
miRNA:   3'- -CCGCUcuUGGAGCUGCCgUGCGugua -5'
29581 5' -56.5 NC_006151.1 + 96719 0.66 0.865403
Target:  5'- cGGCGGcGGACgaggaGGCGGCGgGCGCGa -3'
miRNA:   3'- -CCGCU-CUUGgag--CUGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 127389 0.66 0.865403
Target:  5'- uGGCGGGGGCCgcggccgagUCGACGGgaGCcCGCGg -3'
miRNA:   3'- -CCGCUCUUGG---------AGCUGCCg-UGcGUGUa -5'
29581 5' -56.5 NC_006151.1 + 69608 0.66 0.865403
Target:  5'- cGGCGcaccagcgacAGGAUCUCGcgguCGGCGuccCGCGCGUg -3'
miRNA:   3'- -CCGC----------UCUUGGAGCu---GCCGU---GCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 70944 0.66 0.865403
Target:  5'- cGGCGccu-UCUCGGCGGUGCGCGu-- -3'
miRNA:   3'- -CCGCucuuGGAGCUGCCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 98444 0.66 0.865403
Target:  5'- cGcCGAGAACCUgGcCGGcCugGCGCu- -3'
miRNA:   3'- cC-GCUCUUGGAgCuGCC-GugCGUGua -5'
29581 5' -56.5 NC_006151.1 + 137280 0.66 0.865403
Target:  5'- cGCGGGcACgCUCGagGCGGCcAUGCGCGg -3'
miRNA:   3'- cCGCUCuUG-GAGC--UGCCG-UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 56937 0.66 0.86314
Target:  5'- cGGCG-GGGCgUCGcCGGCgcucagcgccucgaGCGCGCGg -3'
miRNA:   3'- -CCGCuCUUGgAGCuGCCG--------------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 84398 0.66 0.86314
Target:  5'- gGGCGGGGAgCggGugGGCgcggugauaaggcgGCGCGCGg -3'
miRNA:   3'- -CCGCUCUUgGagCugCCG--------------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 11684 0.66 0.857785
Target:  5'- uGCGcccgacGGGGCCgcggGACGGCGCGUGCGg -3'
miRNA:   3'- cCGC------UCUUGGag--CUGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 104655 0.66 0.857785
Target:  5'- cGCGGccGCCgacGCGGCGCGCGCGc -3'
miRNA:   3'- cCGCUcuUGGagcUGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 114359 0.66 0.857785
Target:  5'- -uCGAGGACCcCGACgcgcagGGCGCGCuCAUg -3'
miRNA:   3'- ccGCUCUUGGaGCUG------CCGUGCGuGUA- -5'
29581 5' -56.5 NC_006151.1 + 66537 0.66 0.857785
Target:  5'- cGCGcu--CUUCGGgGGCGCGCGCGg -3'
miRNA:   3'- cCGCucuuGGAGCUgCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 122666 0.66 0.857785
Target:  5'- cGCGAGcGCCgcgcCGA-GGUGCGCGCGg -3'
miRNA:   3'- cCGCUCuUGGa---GCUgCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 119762 0.67 0.849963
Target:  5'- uGGCGG--ACgUgGcCGGCGCGCGCAUn -3'
miRNA:   3'- -CCGCUcuUGgAgCuGCCGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 77606 0.67 0.849963
Target:  5'- cGGagcuGGACCUCuGCGGC-CGCGCGg -3'
miRNA:   3'- -CCgcu-CUUGGAGcUGCCGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 20538 0.67 0.849963
Target:  5'- cGGCGu---CCUCGGCGGgguccacgACGCGCAg -3'
miRNA:   3'- -CCGCucuuGGAGCUGCCg-------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 134796 0.67 0.849963
Target:  5'- uGUGAG-GCCgCGGCGGCcCGCGCc- -3'
miRNA:   3'- cCGCUCuUGGaGCUGCCGuGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 114861 0.67 0.849963
Target:  5'- aGGCGGGGuCCUCGGCcaGGU-CGCugAc -3'
miRNA:   3'- -CCGCUCUuGGAGCUG--CCGuGCGugUa -5'
29581 5' -56.5 NC_006151.1 + 105268 0.67 0.849963
Target:  5'- aGGCcuggGAGGACUUUG--GGCGCGCGCGc -3'
miRNA:   3'- -CCG----CUCUUGGAGCugCCGUGCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.