miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 45601 0.74 0.427271
Target:  5'- cGGgGGGAGCCcCGACGGgGCGgGCGg -3'
miRNA:   3'- -CCgCUCUUGGaGCUGCCgUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 47258 0.69 0.703322
Target:  5'- uGGCGAGAuggACCgCucCGGCGCGCAgCGUc -3'
miRNA:   3'- -CCGCUCU---UGGaGcuGCCGUGCGU-GUA- -5'
29581 5' -56.5 NC_006151.1 + 49486 0.68 0.790083
Target:  5'- aGCGuGGACUgagUCgGGCGuGCGCGCACAc -3'
miRNA:   3'- cCGCuCUUGG---AG-CUGC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 50381 0.66 0.880003
Target:  5'- gGGCGAGAcgcggGCCcCG-CGGUccuCGCGCGg -3'
miRNA:   3'- -CCGCUCU-----UGGaGCuGCCGu--GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 51401 0.67 0.833733
Target:  5'- gGGCGAGcGCgUCG-CaGCGCGUGCAc -3'
miRNA:   3'- -CCGCUCuUGgAGCuGcCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 53240 0.67 0.841943
Target:  5'- cGUGAGcagguUCUCGcUGGCGCGCACGc -3'
miRNA:   3'- cCGCUCuu---GGAGCuGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 53779 0.7 0.652583
Target:  5'- uGGCGuAGAcguUCUgGGCGGCgACGCGCGUc -3'
miRNA:   3'- -CCGC-UCUu--GGAgCUGCCG-UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 53946 0.67 0.80803
Target:  5'- cGGCGAGGgacuugaaccacGCCagCGGCGGCG-GCGCc- -3'
miRNA:   3'- -CCGCUCU------------UGGa-GCUGCCGUgCGUGua -5'
29581 5' -56.5 NC_006151.1 + 54927 0.71 0.625969
Target:  5'- cGGCGAGGugCUgGcgugccacgcgcugcGCGaGCACGCGCGc -3'
miRNA:   3'- -CCGCUCUugGAgC---------------UGC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 55062 0.74 0.43621
Target:  5'- cGGCGAGGACCcggcgggcUCGgccGCGGCGCGCcuCGUg -3'
miRNA:   3'- -CCGCUCUUGG--------AGC---UGCCGUGCGu-GUA- -5'
29581 5' -56.5 NC_006151.1 + 56237 0.67 0.825338
Target:  5'- -cCGAGGACC-CGACGGaguuCGCGCu- -3'
miRNA:   3'- ccGCUCUUGGaGCUGCCgu--GCGUGua -5'
29581 5' -56.5 NC_006151.1 + 56594 0.69 0.723259
Target:  5'- uGGUGcGGAcgcGCCcCGGCGGCGCGCuCAc -3'
miRNA:   3'- -CCGC-UCU---UGGaGCUGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 56937 0.66 0.86314
Target:  5'- cGGCG-GGGCgUCGcCGGCgcucagcgccucgaGCGCGCGg -3'
miRNA:   3'- -CCGCuCUUGgAGCuGCCG--------------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 57206 0.71 0.625969
Target:  5'- aGGCGAaGGCCcgcUCGacgaggccgucgcagGCGGCGCGCGCGg -3'
miRNA:   3'- -CCGCUcUUGG---AGC---------------UGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 57261 0.74 0.454408
Target:  5'- cGCGcGGcCCUCGACGGCcuCGCGCAg -3'
miRNA:   3'- cCGCuCUuGGAGCUGCCGu-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 57290 0.66 0.879294
Target:  5'- gGGCGuccAGcgcGGCCUUGGCGGCGCggccgaagccgcuGCGCGa -3'
miRNA:   3'- -CCGC---UC---UUGGAGCUGCCGUG-------------CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 57480 0.67 0.825338
Target:  5'- cGCGGcGGCCUcgcaggCGACGcGCACGCGCu- -3'
miRNA:   3'- cCGCUcUUGGA------GCUGC-CGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 57618 0.79 0.248549
Target:  5'- cGCGGccGCCUCGACGGCGCGCGa-- -3'
miRNA:   3'- cCGCUcuUGGAGCUGCCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 58328 0.67 0.841943
Target:  5'- cGGCGcGccGGCCUCcGCguaGGCGCGCGCGa -3'
miRNA:   3'- -CCGCuC--UUGGAGcUG---CCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 58423 0.66 0.879294
Target:  5'- gGGCGugcGGcagccacGCCUCGgugGCGuGCGCGCGCGc -3'
miRNA:   3'- -CCGCu--CU-------UGGAGC---UGC-CGUGCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.