miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 20835 0.72 0.540849
Target:  5'- cGCGGGGGCagaggucguaCUCGGCGGCGuacuCGCGCGUg -3'
miRNA:   3'- cCGCUCUUG----------GAGCUGCCGU----GCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 21002 0.69 0.752553
Target:  5'- cGGCGcu-GCCggCGACGuGCACGCugAc -3'
miRNA:   3'- -CCGCucuUGGa-GCUGC-CGUGCGugUa -5'
29581 5' -56.5 NC_006151.1 + 21419 0.66 0.880003
Target:  5'- cGGCGucucGGGCCUCGGgGGuCGCG-GCGUg -3'
miRNA:   3'- -CCGCu---CUUGGAGCUgCC-GUGCgUGUA- -5'
29581 5' -56.5 NC_006151.1 + 21566 0.66 0.872811
Target:  5'- cGGCGAGc-CCgcCGAgGGC-CGCGCGg -3'
miRNA:   3'- -CCGCUCuuGGa-GCUgCCGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 22908 0.66 0.89372
Target:  5'- gGGCGAGAcgaaggucgGCUcCGGCGGCAgucggugaugcCGCugGg -3'
miRNA:   3'- -CCGCUCU---------UGGaGCUGCCGU-----------GCGugUa -5'
29581 5' -56.5 NC_006151.1 + 23250 0.7 0.683144
Target:  5'- -uCGGGGGCCUCGGgGGCAuCGC-CGUg -3'
miRNA:   3'- ccGCUCUUGGAGCUgCCGU-GCGuGUA- -5'
29581 5' -56.5 NC_006151.1 + 24294 0.67 0.815902
Target:  5'- gGGCGGGAAcuCCUCGGgGuGCACcccgaggGCGCGg -3'
miRNA:   3'- -CCGCUCUU--GGAGCUgC-CGUG-------CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 26355 0.72 0.540849
Target:  5'- cGGCGGcGGGCCgCGuCGGgGCGCGCGUc -3'
miRNA:   3'- -CCGCU-CUUGGaGCuGCCgUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 27384 0.66 0.865403
Target:  5'- gGGCGAGAACggCGGggagGGCACGgGCu- -3'
miRNA:   3'- -CCGCUCUUGgaGCUg---CCGUGCgUGua -5'
29581 5' -56.5 NC_006151.1 + 28111 0.66 0.872811
Target:  5'- gGGCGcGGcuCCUCGuCGGCucgggGCGCGCu- -3'
miRNA:   3'- -CCGC-UCuuGGAGCuGCCG-----UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 28183 0.69 0.742882
Target:  5'- cGGCGAGuGCCgUCGGCcgGGCcgccACGCACc- -3'
miRNA:   3'- -CCGCUCuUGG-AGCUG--CCG----UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 30250 0.66 0.872811
Target:  5'- cGGCGGGAGagaCGACgGGCGC-CACAg -3'
miRNA:   3'- -CCGCUCUUggaGCUG-CCGUGcGUGUa -5'
29581 5' -56.5 NC_006151.1 + 31619 0.7 0.652583
Target:  5'- gGGCGGGGauGCCgCGcCGGCACgaGCGCAc -3'
miRNA:   3'- -CCGCUCU--UGGaGCuGCCGUG--CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 31740 0.7 0.693258
Target:  5'- aGGCGcccgcgccggGGAcgcGCCUgCGGCGGCGgGCGCGc -3'
miRNA:   3'- -CCGC----------UCU---UGGA-GCUGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 33898 0.69 0.699303
Target:  5'- gGGCGGGGGCCUCGcgccuccgcguccgGCGGgcggaucgaggccCGCGCGCc- -3'
miRNA:   3'- -CCGCUCUUGGAGC--------------UGCC-------------GUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 36055 0.68 0.771567
Target:  5'- cGGCGAGGAUCUCcucuuCGGCcCGgGCGg -3'
miRNA:   3'- -CCGCUCUUGGAGcu---GCCGuGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 36522 0.67 0.825338
Target:  5'- cGGCGGcgcGGCCUCGGacccCGGCGCcaccaGCACAg -3'
miRNA:   3'- -CCGCUc--UUGGAGCU----GCCGUG-----CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 39294 0.67 0.841943
Target:  5'- cGGCGcGGGACCUCGGCuucGCcgGCGC-CGUg -3'
miRNA:   3'- -CCGC-UCUUGGAGCUGc--CG--UGCGuGUA- -5'
29581 5' -56.5 NC_006151.1 + 41469 0.66 0.880003
Target:  5'- cGGCGGGAcgAUgaCGACGGCgAC-CGCGUg -3'
miRNA:   3'- -CCGCUCU--UGgaGCUGCCG-UGcGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 45537 0.68 0.762118
Target:  5'- cGCGGGAggGCCcgcuucccaCGACGGCGCGCcCGg -3'
miRNA:   3'- cCGCUCU--UGGa--------GCUGCCGUGCGuGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.