miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 733 0.66 0.865403
Target:  5'- gGGCGGGGGCUUCcgcuccGCGGCGCcCGCc- -3'
miRNA:   3'- -CCGCUCUUGGAGc-----UGCCGUGcGUGua -5'
29581 5' -56.5 NC_006151.1 + 2284 0.69 0.703322
Target:  5'- cGGCGGGGcGCCcgCGGCGGCGacgGCGCc- -3'
miRNA:   3'- -CCGCUCU-UGGa-GCUGCCGUg--CGUGua -5'
29581 5' -56.5 NC_006151.1 + 2415 0.73 0.501604
Target:  5'- cGGCGAGGcCC-CGGCGGC-CGCAgGa -3'
miRNA:   3'- -CCGCUCUuGGaGCUGCCGuGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 3139 0.66 0.872811
Target:  5'- cGCGGGGcgcCCUCGGCGGgCucgGCGCAg -3'
miRNA:   3'- cCGCUCUu--GGAGCUGCC-Gug-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 3386 0.71 0.611643
Target:  5'- cGGCGAGGgccGCCUCGGagGGC-CGCgGCGUg -3'
miRNA:   3'- -CCGCUCU---UGGAGCUg-CCGuGCG-UGUA- -5'
29581 5' -56.5 NC_006151.1 + 4363 0.73 0.473008
Target:  5'- gGGCgcaGAGGGCCUCGACGGUcgccuccccgGCGCGgGg -3'
miRNA:   3'- -CCG---CUCUUGGAGCUGCCG----------UGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 5073 0.67 0.849963
Target:  5'- aGGcCGAGGGCCgCGgggccGCGGCGgGCGCc- -3'
miRNA:   3'- -CC-GCUCUUGGaGC-----UGCCGUgCGUGua -5'
29581 5' -56.5 NC_006151.1 + 6150 0.68 0.762118
Target:  5'- cGCGAGGacggcggccucgGCCUCGGCGGCGuCGUc--- -3'
miRNA:   3'- cCGCUCU------------UGGAGCUGCCGU-GCGugua -5'
29581 5' -56.5 NC_006151.1 + 6483 0.73 0.491985
Target:  5'- gGGcCGAGAGCCUCGGUGGguCGgGCGUc -3'
miRNA:   3'- -CC-GCUCUUGGAGCUGCCguGCgUGUA- -5'
29581 5' -56.5 NC_006151.1 + 8242 0.69 0.752553
Target:  5'- cGGgGAGGGCCggGcCGGCGCGC-CGg -3'
miRNA:   3'- -CCgCUCUUGGagCuGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 10482 0.67 0.833733
Target:  5'- aGGagGAGAGCCgcc-CGGCGCGCGCc- -3'
miRNA:   3'- -CCg-CUCUUGGagcuGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 11684 0.66 0.857785
Target:  5'- uGCGcccgacGGGGCCgcggGACGGCGCGUGCGg -3'
miRNA:   3'- cCGC------UCUUGGag--CUGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 17476 0.69 0.733114
Target:  5'- cGGCGuGuccuCgUCGGCGGCGCGC-CGc -3'
miRNA:   3'- -CCGCuCuu--GgAGCUGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 18154 0.67 0.825338
Target:  5'- cGGCGGGGg---CGGCGGCGgGCAUGUc -3'
miRNA:   3'- -CCGCUCUuggaGCUGCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 18313 0.71 0.621874
Target:  5'- aGCGGGGcGCCUCcuCGGgGCGCACGUa -3'
miRNA:   3'- cCGCUCU-UGGAGcuGCCgUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 18561 0.73 0.521083
Target:  5'- cGCGAGGccGCC-CGGCGGCGggaGCACAg -3'
miRNA:   3'- cCGCUCU--UGGaGCUGCCGUg--CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 19716 0.68 0.790083
Target:  5'- aGGCGAGGGCCgagcCGAa-GCcCGCGCGg -3'
miRNA:   3'- -CCGCUCUUGGa---GCUgcCGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 20137 0.69 0.742882
Target:  5'- gGGCGGGcGCCgCGGgGGCG-GCGCGUg -3'
miRNA:   3'- -CCGCUCuUGGaGCUgCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 20538 0.67 0.849963
Target:  5'- cGGCGu---CCUCGGCGGgguccacgACGCGCAg -3'
miRNA:   3'- -CCGCucuuGGAGCUGCCg-------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 20627 0.68 0.799132
Target:  5'- uGGUGGGGGcgcccCCUgGGCGGCACcagggccgucaGCACAa -3'
miRNA:   3'- -CCGCUCUU-----GGAgCUGCCGUG-----------CGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.