miRNA display CGI


Results 1 - 20 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 81280 0.88 0.061581
Target:  5'- cGGCGGGGAUCUCGggcGCGGCGCGCGCGa -3'
miRNA:   3'- -CCGCUCUUGGAGC---UGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 67325 0.84 0.110643
Target:  5'- gGGCGAGAacaucaccgucACCUucccCGACGGCGCGCGCAg -3'
miRNA:   3'- -CCGCUCU-----------UGGA----GCUGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 83022 0.82 0.147228
Target:  5'- cGGCGAGGGCCccaggUCGACGGUggagACGCGCAg -3'
miRNA:   3'- -CCGCUCUUGG-----AGCUGCCG----UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 84572 0.81 0.175952
Target:  5'- aGCGAGGGCCUCGACGcgcgccucgcGCugGCGCAc -3'
miRNA:   3'- cCGCUCUUGGAGCUGC----------CGugCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 66938 0.79 0.236831
Target:  5'- gGGCGAGGGCaaaggCGGCGGCGgGCGCGg -3'
miRNA:   3'- -CCGCUCUUGga---GCUGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 57618 0.79 0.248549
Target:  5'- cGCGGccGCCUCGACGGCGCGCGa-- -3'
miRNA:   3'- cCGCUcuUGGAGCUGCCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 66236 0.78 0.273419
Target:  5'- cGCGcAGAAgCUCGACGGUGCGCGCc- -3'
miRNA:   3'- cCGC-UCUUgGAGCUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 88214 0.77 0.300244
Target:  5'- aGGCGAGGcgcGCCUcCGGgGGCACGCAgAg -3'
miRNA:   3'- -CCGCUCU---UGGA-GCUgCCGUGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 100000 0.77 0.313682
Target:  5'- cGCGAGGACCU-GACGGUggcgcacGCGCGCAa -3'
miRNA:   3'- cCGCUCUUGGAgCUGCCG-------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 65712 0.76 0.329059
Target:  5'- aGGUaGGGGGCCUCGcGCGGCuGCGCGCGg -3'
miRNA:   3'- -CCG-CUCUUGGAGC-UGCCG-UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 64850 0.76 0.329059
Target:  5'- cGGCGAGGGCCUCGGCGGaggGC-CGCu- -3'
miRNA:   3'- -CCGCUCUUGGAGCUGCCg--UGcGUGua -5'
29581 5' -56.5 NC_006151.1 + 72050 0.76 0.336575
Target:  5'- cGCGcAGcgUCUCGGCGGCGCGCGCc- -3'
miRNA:   3'- cCGC-UCuuGGAGCUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 133168 0.76 0.359865
Target:  5'- gGGCGuGGGCCUCGgccacgcgucccACGGC-CGCGCAg -3'
miRNA:   3'- -CCGCuCUUGGAGC------------UGCCGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 81506 0.75 0.372739
Target:  5'- cGGCGAGAGCgcggcccgcgugagCUCGGCGGCcgcggcgGCGCGCu- -3'
miRNA:   3'- -CCGCUCUUG--------------GAGCUGCCG-------UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 105706 0.75 0.376006
Target:  5'- cGGCGcGGccgcgcGCCUCGACGGCgccguGCGCGCGc -3'
miRNA:   3'- -CCGCuCU------UGGAGCUGCCG-----UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 90416 0.75 0.401118
Target:  5'- cGGCGAGGAgCgCGACGaGCACGCcCAUc -3'
miRNA:   3'- -CCGCUCUUgGaGCUGC-CGUGCGuGUA- -5'
29581 5' -56.5 NC_006151.1 + 91562 0.75 0.41844
Target:  5'- aGCG-GGGCgaUGGCGGCGCGCGCGUg -3'
miRNA:   3'- cCGCuCUUGgaGCUGCCGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 45601 0.74 0.427271
Target:  5'- cGGgGGGAGCCcCGACGGgGCGgGCGg -3'
miRNA:   3'- -CCgCUCUUGGaGCUGCCgUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 55062 0.74 0.43621
Target:  5'- cGGCGAGGACCcggcgggcUCGgccGCGGCGCGCcuCGUg -3'
miRNA:   3'- -CCGCUCUUGG--------AGC---UGCCGUGCGu-GUA- -5'
29581 5' -56.5 NC_006151.1 + 96851 0.74 0.445257
Target:  5'- gGGCGGGGaaaccgcgcccGCCgggCG-CGGCGCGCGCGg -3'
miRNA:   3'- -CCGCUCU-----------UGGa--GCuGCCGUGCGUGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.