Results 21 - 40 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29581 | 5' | -56.5 | NC_006151.1 | + | 57261 | 0.74 | 0.454408 |
Target: 5'- cGCGcGGcCCUCGACGGCcuCGCGCAg -3' miRNA: 3'- cCGCuCUuGGAGCUGCCGu-GCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 76254 | 0.73 | 0.472069 |
Target: 5'- -cCGAGGGCCUCGACGGCgaucgagaaggcgGCGUugAg -3' miRNA: 3'- ccGCUCUUGGAGCUGCCG-------------UGCGugUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 103832 | 0.73 | 0.473008 |
Target: 5'- cGGCcgugGAGAugCUCgGGCGGCugcGCGCGCAg -3' miRNA: 3'- -CCG----CUCUugGAG-CUGCCG---UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 97352 | 0.73 | 0.473008 |
Target: 5'- cGCGGGGaagGCCgcggCGGCGGCGgGCGCGg -3' miRNA: 3'- cCGCUCU---UGGa---GCUGCCGUgCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 65039 | 0.73 | 0.473008 |
Target: 5'- cGGCaGGGGGCCcggCGGCGGCGgGCGCc- -3' miRNA: 3'- -CCG-CUCUUGGa--GCUGCCGUgCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 4363 | 0.73 | 0.473008 |
Target: 5'- gGGCgcaGAGGGCCUCGACGGUcgccuccccgGCGCGgGg -3' miRNA: 3'- -CCG---CUCUUGGAGCUGCCG----------UGCGUgUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 6483 | 0.73 | 0.491985 |
Target: 5'- gGGcCGAGAGCCUCGGUGGguCGgGCGUc -3' miRNA: 3'- -CC-GCUCUUGGAGCUGCCguGCgUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 130839 | 0.73 | 0.501604 |
Target: 5'- cGGCGcGGAgucgucGCCgUCGGCGGCGCGgGCGg -3' miRNA: 3'- -CCGC-UCU------UGG-AGCUGCCGUGCgUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 59481 | 0.73 | 0.501604 |
Target: 5'- cGGCGAGGcgcccucgaagaGCC-CGGCGGCcuccgcgacgcGCGCGCAg -3' miRNA: 3'- -CCGCUCU------------UGGaGCUGCCG-----------UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 2415 | 0.73 | 0.501604 |
Target: 5'- cGGCGAGGcCC-CGGCGGC-CGCAgGa -3' miRNA: 3'- -CCGCUCUuGGaGCUGCCGuGCGUgUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 18561 | 0.73 | 0.521083 |
Target: 5'- cGCGAGGccGCC-CGGCGGCGggaGCACAg -3' miRNA: 3'- cCGCUCU--UGGaGCUGCCGUg--CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 64231 | 0.73 | 0.521083 |
Target: 5'- cGGCGuacAGGGCCgCGACGGCG-GCGCGg -3' miRNA: 3'- -CCGC---UCUUGGaGCUGCCGUgCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 141254 | 0.73 | 0.525014 |
Target: 5'- gGGCGAGGagauccagucgcgggGCCUCGGCGGCuGCGguCc- -3' miRNA: 3'- -CCGCUCU---------------UGGAGCUGCCG-UGCguGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 26355 | 0.72 | 0.540849 |
Target: 5'- cGGCGGcGGGCCgCGuCGGgGCGCGCGUc -3' miRNA: 3'- -CCGCU-CUUGGaGCuGCCgUGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 20835 | 0.72 | 0.540849 |
Target: 5'- cGCGGGGGCagaggucguaCUCGGCGGCGuacuCGCGCGUg -3' miRNA: 3'- cCGCUCUUG----------GAGCUGCCGU----GCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 105513 | 0.72 | 0.540849 |
Target: 5'- cGCGAGcucGACCgcaUGGCGGCGCGCAUc- -3' miRNA: 3'- cCGCUC---UUGGa--GCUGCCGUGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 127675 | 0.72 | 0.550828 |
Target: 5'- gGGCGGGAAcuCCUCGuCGGCG-GCGCu- -3' miRNA: 3'- -CCGCUCUU--GGAGCuGCCGUgCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 101676 | 0.72 | 0.550828 |
Target: 5'- gGGCGAGAcguACCUCGugGacgaGC-CGUACGUg -3' miRNA: 3'- -CCGCUCU---UGGAGCugC----CGuGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 135095 | 0.72 | 0.550828 |
Target: 5'- cGGCG-GGGCCgggcgggCGGCGGUAgCGCGCGg -3' miRNA: 3'- -CCGCuCUUGGa------GCUGCCGU-GCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 64916 | 0.72 | 0.560861 |
Target: 5'- cGCGAGcACCUCcACGGCGuacuCGCGCGUc -3' miRNA: 3'- cCGCUCuUGGAGcUGCCGU----GCGUGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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