miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 141629 0.7 0.642352
Target:  5'- gGGCGGGucgcuGCCgCGGCGGCGCG-GCGg -3'
miRNA:   3'- -CCGCUCu----UGGaGCUGCCGUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 141489 0.72 0.581071
Target:  5'- -cCGAGAGCCUCcGCGGCgACGgGCGUc -3'
miRNA:   3'- ccGCUCUUGGAGcUGCCG-UGCgUGUA- -5'
29581 5' -56.5 NC_006151.1 + 141254 0.73 0.525014
Target:  5'- gGGCGAGGagauccagucgcgggGCCUCGGCGGCuGCGguCc- -3'
miRNA:   3'- -CCGCUCU---------------UGGAGCUGCCG-UGCguGua -5'
29581 5' -56.5 NC_006151.1 + 140448 0.68 0.762118
Target:  5'- cGGCGccuGCCUCGGCGGgaucauggaCGCGCugGa -3'
miRNA:   3'- -CCGCucuUGGAGCUGCC---------GUGCGugUa -5'
29581 5' -56.5 NC_006151.1 + 139649 0.67 0.825338
Target:  5'- cGCGGGggUCgCGGCgGGCGCGC-CGc -3'
miRNA:   3'- cCGCUCuuGGaGCUG-CCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 139202 0.66 0.879294
Target:  5'- gGGCGcuGGAGCUccUGGCGGCGacgcugcCGCACAUc -3'
miRNA:   3'- -CCGC--UCUUGGa-GCUGCCGU-------GCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 139103 0.67 0.825338
Target:  5'- uGGCGcuguucacGAcCCUCGGCGuCACGCGCGc -3'
miRNA:   3'- -CCGCu-------CUuGGAGCUGCcGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 138619 0.7 0.642352
Target:  5'- cGGCGAGGacGCCgcCGGgGGCGCGC-CGg -3'
miRNA:   3'- -CCGCUCU--UGGa-GCUgCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 138193 0.71 0.631089
Target:  5'- uGGCGcccgugcugcGGcACCUCGACgcgcacuucaacgGGCGCGCGCAc -3'
miRNA:   3'- -CCGC----------UCuUGGAGCUG-------------CCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 137317 0.67 0.80803
Target:  5'- cGCGcGGugCUCGACGcGCuCGCGCu- -3'
miRNA:   3'- cCGCuCUugGAGCUGC-CGuGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 137280 0.66 0.865403
Target:  5'- cGCGGGcACgCUCGagGCGGCcAUGCGCGg -3'
miRNA:   3'- cCGCUCuUG-GAGC--UGCCG-UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 137108 0.69 0.742882
Target:  5'- uGGcCGGGGacGCCUgggggcgcgCGACGGCGCgGCGCGa -3'
miRNA:   3'- -CC-GCUCU--UGGA---------GCUGCCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 136419 0.68 0.799132
Target:  5'- cGCGGGGcCCcgCGGCGGCGCacgccGCGCGc -3'
miRNA:   3'- cCGCUCUuGGa-GCUGCCGUG-----CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 135941 0.67 0.849963
Target:  5'- cGCGGGGAgccCCUCG-CGGCGCGgGaCGUc -3'
miRNA:   3'- cCGCUCUU---GGAGCuGCCGUGCgU-GUA- -5'
29581 5' -56.5 NC_006151.1 + 135485 0.67 0.80803
Target:  5'- cGCGcGGGCCa-GGCGGCGCGCGg-- -3'
miRNA:   3'- cCGCuCUUGGagCUGCCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 135095 0.72 0.550828
Target:  5'- cGGCG-GGGCCgggcgggCGGCGGUAgCGCGCGg -3'
miRNA:   3'- -CCGCuCUUGGa------GCUGCCGU-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 134796 0.67 0.849963
Target:  5'- uGUGAG-GCCgCGGCGGCcCGCGCc- -3'
miRNA:   3'- cCGCUCuUGGaGCUGCCGuGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 133657 0.71 0.611643
Target:  5'- uGCGAGAggcgcuGCCggcgCGGCGGCGCGCc--- -3'
miRNA:   3'- cCGCUCU------UGGa---GCUGCCGUGCGugua -5'
29581 5' -56.5 NC_006151.1 + 133476 0.72 0.578029
Target:  5'- cGCGAGGcggccgcgggcgucACCUUGGCGGCGCgggggGCGCGg -3'
miRNA:   3'- cCGCUCU--------------UGGAGCUGCCGUG-----CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 133430 0.7 0.642352
Target:  5'- cGCGGGggUCUUGGCGGCcgAgGCGCu- -3'
miRNA:   3'- cCGCUCuuGGAGCUGCCG--UgCGUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.