miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 133168 0.76 0.359865
Target:  5'- gGGCGuGGGCCUCGgccacgcgucccACGGC-CGCGCAg -3'
miRNA:   3'- -CCGCuCUUGGAGC------------UGCCGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 132089 0.71 0.611643
Target:  5'- cGGCGccguccuCCUCGAugaggcCGGCGCGCACGa -3'
miRNA:   3'- -CCGCucuu---GGAGCU------GCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 132028 0.7 0.652583
Target:  5'- uGCGAGAGgUagcCGGCGGCGCGCGgCAg -3'
miRNA:   3'- cCGCUCUUgGa--GCUGCCGUGCGU-GUa -5'
29581 5' -56.5 NC_006151.1 + 131955 0.68 0.799132
Target:  5'- gGGCGAGGGCg--GGCGGCA-GUACGUg -3'
miRNA:   3'- -CCGCUCUUGgagCUGCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 131545 0.69 0.723259
Target:  5'- uGCGAGcGCCUCG--GGCGcCGCACGg -3'
miRNA:   3'- cCGCUCuUGGAGCugCCGU-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 130938 0.7 0.652583
Target:  5'- gGGCGGGGGCggCGGgGGguCGCGCGg -3'
miRNA:   3'- -CCGCUCUUGgaGCUgCCguGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 130839 0.73 0.501604
Target:  5'- cGGCGcGGAgucgucGCCgUCGGCGGCGCGgGCGg -3'
miRNA:   3'- -CCGC-UCU------UGG-AGCUGCCGUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 130291 0.68 0.780892
Target:  5'- gGGCGcGcGCCggcCGACGGCgcggaGCGCGCGc -3'
miRNA:   3'- -CCGCuCuUGGa--GCUGCCG-----UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 129999 0.68 0.790083
Target:  5'- cGuCGGGGAUgUCcgaGACGGCGCGCGCc- -3'
miRNA:   3'- cC-GCUCUUGgAG---CUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 129421 0.69 0.742882
Target:  5'- cGGCGAGGucgacguccgGCCccaagUgGGCGGgGCGCACGg -3'
miRNA:   3'- -CCGCUCU----------UGG-----AgCUGCCgUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 128788 0.68 0.799132
Target:  5'- cGGCcucGGucGCCUCGGCGaGCgcgGCGCGCGUg -3'
miRNA:   3'- -CCGc--UCu-UGGAGCUGC-CG---UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 127815 0.68 0.780892
Target:  5'- cGCGAGGuCCUUG-CGGUucACGUACGUg -3'
miRNA:   3'- cCGCUCUuGGAGCuGCCG--UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 127675 0.72 0.550828
Target:  5'- gGGCGGGAAcuCCUCGuCGGCG-GCGCu- -3'
miRNA:   3'- -CCGCUCUU--GGAGCuGCCGUgCGUGua -5'
29581 5' -56.5 NC_006151.1 + 127445 0.68 0.762118
Target:  5'- cGCGAGAGCC--GGCGGCGCacgaaGCGCu- -3'
miRNA:   3'- cCGCUCUUGGagCUGCCGUG-----CGUGua -5'
29581 5' -56.5 NC_006151.1 + 127389 0.66 0.865403
Target:  5'- uGGCGGGGGCCgcggccgagUCGACGGgaGCcCGCGg -3'
miRNA:   3'- -CCGCUCUUGG---------AGCUGCCg-UGcGUGUa -5'
29581 5' -56.5 NC_006151.1 + 124045 0.69 0.742882
Target:  5'- cGGCGAGuacggcGACCUgGACGcGCggacggccguGCGCGCGg -3'
miRNA:   3'- -CCGCUC------UUGGAgCUGC-CG----------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 123295 0.67 0.816768
Target:  5'- cGCGAGAcgggcuGCUUCGACGcGCACaGCuuCAUg -3'
miRNA:   3'- cCGCUCU------UGGAGCUGC-CGUG-CGu-GUA- -5'
29581 5' -56.5 NC_006151.1 + 123035 0.66 0.89372
Target:  5'- uGGCGugggcGGACCUgcCGgccGCGGCGCuGCGCGa -3'
miRNA:   3'- -CCGCu----CUUGGA--GC---UGCCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 122928 0.66 0.886287
Target:  5'- cGGCGAcGAcgcggacGCCgaCGGCGGCGC-CGCGg -3'
miRNA:   3'- -CCGCU-CU-------UGGa-GCUGCCGUGcGUGUa -5'
29581 5' -56.5 NC_006151.1 + 122666 0.66 0.857785
Target:  5'- cGCGAGcGCCgcgcCGA-GGUGCGCGCGg -3'
miRNA:   3'- cCGCUCuUGGa---GCUgCCGUGCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.