Results 41 - 60 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29581 | 5' | -56.5 | NC_006151.1 | + | 96221 | 0.66 | 0.886974 |
Target: 5'- uGGCGGcGGCCgCGGCGagGCGCACAa -3' miRNA: 3'- -CCGCUcUUGGaGCUGCcgUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 68081 | 0.66 | 0.886974 |
Target: 5'- cGGCGGGcagcGCCUCGA-GGCuCGCGuCGc -3' miRNA: 3'- -CCGCUCu---UGGAGCUgCCGuGCGU-GUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 57290 | 0.66 | 0.879294 |
Target: 5'- gGGCGuccAGcgcGGCCUUGGCGGCGCggccgaagccgcuGCGCGa -3' miRNA: 3'- -CCGC---UC---UUGGAGCUGCCGUG-------------CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 139202 | 0.66 | 0.879294 |
Target: 5'- gGGCGcuGGAGCUccUGGCGGCGacgcugcCGCACAUc -3' miRNA: 3'- -CCGC--UCUUGGa-GCUGCCGU-------GCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 58423 | 0.66 | 0.879294 |
Target: 5'- gGGCGugcGGcagccacGCCUCGgugGCGuGCGCGCGCGc -3' miRNA: 3'- -CCGCu--CU-------UGGAGC---UGC-CGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 21419 | 0.66 | 0.880003 |
Target: 5'- cGGCGucucGGGCCUCGGgGGuCGCG-GCGUg -3' miRNA: 3'- -CCGCu---CUUGGAGCUgCC-GUGCgUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 50381 | 0.66 | 0.880003 |
Target: 5'- gGGCGAGAcgcggGCCcCG-CGGUccuCGCGCGg -3' miRNA: 3'- -CCGCUCU-----UGGaGCuGCCGu--GCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 85775 | 0.66 | 0.880003 |
Target: 5'- uGGCGcuGGAcgcGCaCUCGAUccGCGCGCGCGUg -3' miRNA: 3'- -CCGC--UCU---UG-GAGCUGc-CGUGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 102957 | 0.66 | 0.880003 |
Target: 5'- cGGCGcccGCCgcccaCGACGGCGCGCuGCu- -3' miRNA: 3'- -CCGCucuUGGa----GCUGCCGUGCG-UGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 104851 | 0.66 | 0.880003 |
Target: 5'- aGGCG-GAccagGCCgcggCGACGGaGCGCGCc- -3' miRNA: 3'- -CCGCuCU----UGGa---GCUGCCgUGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 41469 | 0.66 | 0.880003 |
Target: 5'- cGGCGGGAcgAUgaCGACGGCgAC-CGCGUg -3' miRNA: 3'- -CCGCUCU--UGgaGCUGCCG-UGcGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 109293 | 0.66 | 0.884906 |
Target: 5'- -cCGAGAucgagcggcccgccGCCUCGGCGGCA-GCAg-- -3' miRNA: 3'- ccGCUCU--------------UGGAGCUGCCGUgCGUgua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 85383 | 0.66 | 0.886287 |
Target: 5'- cGGCGcGAacgucggcGCCaacgaggUCGACGGCGCGgGCu- -3' miRNA: 3'- -CCGCuCU--------UGG-------AGCUGCCGUGCgUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 122928 | 0.66 | 0.886287 |
Target: 5'- cGGCGAcGAcgcggacGCCgaCGGCGGCGC-CGCGg -3' miRNA: 3'- -CCGCU-CU-------UGGa-GCUGCCGUGcGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 114861 | 0.67 | 0.849963 |
Target: 5'- aGGCGGGGuCCUCGGCcaGGU-CGCugAc -3' miRNA: 3'- -CCGCUCUuGGAGCUG--CCGuGCGugUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 134796 | 0.67 | 0.849963 |
Target: 5'- uGUGAG-GCCgCGGCGGCcCGCGCc- -3' miRNA: 3'- cCGCUCuUGGaGCUGCCGuGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 20538 | 0.67 | 0.849963 |
Target: 5'- cGGCGu---CCUCGGCGGgguccacgACGCGCAg -3' miRNA: 3'- -CCGCucuuGGAGCUGCCg-------UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 77606 | 0.67 | 0.849963 |
Target: 5'- cGGagcuGGACCUCuGCGGC-CGCGCGg -3' miRNA: 3'- -CCgcu-CUUGGAGcUGCCGuGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 119762 | 0.67 | 0.849963 |
Target: 5'- uGGCGG--ACgUgGcCGGCGCGCGCAUn -3' miRNA: 3'- -CCGCUcuUGgAgCuGCCGUGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 105268 | 0.67 | 0.849963 |
Target: 5'- aGGCcuggGAGGACUUUG--GGCGCGCGCGc -3' miRNA: 3'- -CCG----CUCUUGGAGCugCCGUGCGUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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