miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 59151 0.66 0.872811
Target:  5'- gGGCGGGu-CCagGcCGGCGuCGCGCAg -3'
miRNA:   3'- -CCGCUCuuGGagCuGCCGU-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 59481 0.73 0.501604
Target:  5'- cGGCGAGGcgcccucgaagaGCC-CGGCGGCcuccgcgacgcGCGCGCAg -3'
miRNA:   3'- -CCGCUCU------------UGGaGCUGCCG-----------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 59663 0.69 0.713325
Target:  5'- uGCGcAGcGCCUCgggGACGcGCGCGCACGc -3'
miRNA:   3'- cCGC-UCuUGGAG---CUGC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 60867 0.68 0.762118
Target:  5'- -aCGAGGACC-CG-CGGCAgcCGCGCAg -3'
miRNA:   3'- ccGCUCUUGGaGCuGCCGU--GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 61286 0.7 0.652583
Target:  5'- uGCGGGGACggaagCUCGACGGgCGCGuCGCGc -3'
miRNA:   3'- cCGCUCUUG-----GAGCUGCC-GUGC-GUGUa -5'
29581 5' -56.5 NC_006151.1 + 62347 0.67 0.825338
Target:  5'- aGCGAGGcCCUCGG-GGagACGCACGg -3'
miRNA:   3'- cCGCUCUuGGAGCUgCCg-UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 63332 0.67 0.80803
Target:  5'- cGCGAaaGGCCUCcuCGGCGCGCGCc- -3'
miRNA:   3'- cCGCUc-UUGGAGcuGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 64231 0.73 0.521083
Target:  5'- cGGCGuacAGGGCCgCGACGGCG-GCGCGg -3'
miRNA:   3'- -CCGC---UCUUGGaGCUGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 64440 0.69 0.752553
Target:  5'- cGCGuGGccGCCUCcaccgucaggauGGCGGCGCGCGCc- -3'
miRNA:   3'- cCGCuCU--UGGAG------------CUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 64483 0.69 0.739962
Target:  5'- cGGCGGGGACgcccgcgggcgcgggCGGCgGGCGCGCGCc- -3'
miRNA:   3'- -CCGCUCUUGga-------------GCUG-CCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 64552 0.68 0.771567
Target:  5'- cGGCGAGGccguggcgcgccAgCUCGACGaGCAggucgUGCACGUa -3'
miRNA:   3'- -CCGCUCU------------UgGAGCUGC-CGU-----GCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 64850 0.76 0.329059
Target:  5'- cGGCGAGGGCCUCGGCGGaggGC-CGCu- -3'
miRNA:   3'- -CCGCUCUUGGAGCUGCCg--UGcGUGua -5'
29581 5' -56.5 NC_006151.1 + 64916 0.72 0.560861
Target:  5'- cGCGAGcACCUCcACGGCGuacuCGCGCGUc -3'
miRNA:   3'- cCGCUCuUGGAGcUGCCGU----GCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 65039 0.73 0.473008
Target:  5'- cGGCaGGGGGCCcggCGGCGGCGgGCGCc- -3'
miRNA:   3'- -CCG-CUCUUGGa--GCUGCCGUgCGUGua -5'
29581 5' -56.5 NC_006151.1 + 65712 0.76 0.329059
Target:  5'- aGGUaGGGGGCCUCGcGCGGCuGCGCGCGg -3'
miRNA:   3'- -CCG-CUCUUGGAGC-UGCCG-UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 66236 0.78 0.273419
Target:  5'- cGCGcAGAAgCUCGACGGUGCGCGCc- -3'
miRNA:   3'- cCGC-UCUUgGAGCUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 66537 0.66 0.857785
Target:  5'- cGCGcu--CUUCGGgGGCGCGCGCGg -3'
miRNA:   3'- cCGCucuuGGAGCUgCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 66593 0.66 0.89172
Target:  5'- cGGcCGAGGcgcucgacuucgccGCCUaCGACGGCGaGCGCc- -3'
miRNA:   3'- -CC-GCUCU--------------UGGA-GCUGCCGUgCGUGua -5'
29581 5' -56.5 NC_006151.1 + 66854 0.67 0.833733
Target:  5'- aGGaCGAGAggGCCggGGCGGCGCgaaggGCGCGc -3'
miRNA:   3'- -CC-GCUCU--UGGagCUGCCGUG-----CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 66938 0.79 0.236831
Target:  5'- gGGCGAGGGCaaaggCGGCGGCGgGCGCGg -3'
miRNA:   3'- -CCGCUCUUGga---GCUGCCGUgCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.