miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 20130 0.71 0.396089
Target:  5'- -gGCUGGgGGGCggGCGcCGCGgGGGCGg -3'
miRNA:   3'- ugCGACCgCCUG--UGC-GUGCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 20317 0.69 0.53031
Target:  5'- gGCGUUGGCggcggcgagcaGGACGCGCgacacgACGCuGGCGUu -3'
miRNA:   3'- -UGCGACCG-----------CCUGUGCG------UGCGcCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 20766 0.8 0.108176
Target:  5'- cCGC-GGCGGACGCGCGC-CGGGCGa -3'
miRNA:   3'- uGCGaCCGCCUGUGCGUGcGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 21003 0.66 0.697308
Target:  5'- gGCGCUGcCGGcgACGUGCACGCuGACGc -3'
miRNA:   3'- -UGCGACcGCC--UGUGCGUGCGcCUGCa -5'
29583 3' -60.9 NC_006151.1 + 21313 0.69 0.511305
Target:  5'- aGCGgUGGCGcGAgACGCccgGCGCGG-CGg -3'
miRNA:   3'- -UGCgACCGC-CUgUGCG---UGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 21478 0.68 0.559278
Target:  5'- uCGCcGGCucGGGCAgGCggccgggggGCGCGGGCGUc -3'
miRNA:   3'- uGCGaCCG--CCUGUgCG---------UGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 22250 0.67 0.638161
Target:  5'- cACGaCUcGGUGuACGgGUACGCGGGCGg -3'
miRNA:   3'- -UGC-GA-CCGCcUGUgCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 23005 0.69 0.501908
Target:  5'- cGCGCgGGUGGGgGCGCGgG-GGugGUg -3'
miRNA:   3'- -UGCGaCCGCCUgUGCGUgCgCCugCA- -5'
29583 3' -60.9 NC_006151.1 + 23410 0.67 0.638161
Target:  5'- aGCGCUGGUGGuCGCcgGC-CGUggGGGCGa -3'
miRNA:   3'- -UGCGACCGCCuGUG--CGuGCG--CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 23873 0.68 0.549567
Target:  5'- gGCGUUGGCGGGgGCGagcggguuCACGggcUGGGCGUc -3'
miRNA:   3'- -UGCGACCGCCUgUGC--------GUGC---GCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 24241 0.69 0.49166
Target:  5'- -gGCUGGCGGugGgucccggCGUAC-CGGACGa -3'
miRNA:   3'- ugCGACCGCCugU-------GCGUGcGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 26353 0.66 0.707033
Target:  5'- -gGCggcGGCGGGCcgcgucgggGCGCGCgucccccgGCGGGCGg -3'
miRNA:   3'- ugCGa--CCGCCUG---------UGCGUG--------CGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 27223 0.69 0.53031
Target:  5'- cGCGCgccGUGGACGCGCACcuccucgggGuCGGGCGg -3'
miRNA:   3'- -UGCGac-CGCCUGUGCGUG---------C-GCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 27442 0.71 0.379889
Target:  5'- gGCGC-GGCGGACGCGguggguCGgGGGCGg -3'
miRNA:   3'- -UGCGaCCGCCUGUGCgu----GCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 30610 0.66 0.707033
Target:  5'- aACGCgGGCGGucgGCGUGCGCGCugugcgGGugGg -3'
miRNA:   3'- -UGCGaCCGCC---UGUGCGUGCG------CCugCa -5'
29583 3' -60.9 NC_006151.1 + 30905 0.66 0.687531
Target:  5'- aGCGC--GCGGuaGCGCcCGCGGGCGg -3'
miRNA:   3'- -UGCGacCGCCugUGCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 31631 0.73 0.326774
Target:  5'- cGCGCcGGCacgaGCGCACGCGGGCGc -3'
miRNA:   3'- -UGCGaCCGccugUGCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 31756 0.78 0.142735
Target:  5'- gACGCgccugcggcGGCGGGCGCGCGC-CGGGCGg -3'
miRNA:   3'- -UGCGa--------CCGCCUGUGCGUGcGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 37966 0.71 0.377497
Target:  5'- -aGCUGGCGGACGCcugcguccuggccuGC-CGCGG-CGUc -3'
miRNA:   3'- ugCGACCGCCUGUG--------------CGuGCGCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 39371 0.74 0.254824
Target:  5'- gUGCUGGacaccaucgaGGACugGCcCGCGGACGg -3'
miRNA:   3'- uGCGACCg---------CCUGugCGuGCGCCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.