miRNA display CGI


Results 1 - 20 of 297 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 2589 0.79 0.125923
Target:  5'- cGCGCUGGCGG-UAgGCGCGCGG-CGg -3'
miRNA:   3'- -UGCGACCGCCuGUgCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 2704 0.68 0.567081
Target:  5'- gUGCaGGCGGGCGaaggaggccucCACGCGGGCGa -3'
miRNA:   3'- uGCGaCCGCCUGUgc---------GUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 2812 0.73 0.312646
Target:  5'- gGCGCacugGGCGGccggguccAgGCGgACGCGGACGUa -3'
miRNA:   3'- -UGCGa---CCGCC--------UgUGCgUGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 3246 0.69 0.501908
Target:  5'- gGCGCggcGGCGGAgcggggcgcCGCgGCGCGCGG-CGa -3'
miRNA:   3'- -UGCGa--CCGCCU---------GUG-CGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 3435 0.66 0.697308
Target:  5'- gACGC-GGCGGAagcCGC-CGuCGGGCGc -3'
miRNA:   3'- -UGCGaCCGCCUgu-GCGuGC-GCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 4028 0.66 0.716698
Target:  5'- gGCGUagguccaGGCGGccuCGCGgGCGCGGGCc- -3'
miRNA:   3'- -UGCGa------CCGCCu--GUGCgUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 4226 0.74 0.260188
Target:  5'- gGCGCgGGCGGGCGCGgGCagccggaGCGGGCa- -3'
miRNA:   3'- -UGCGaCCGCCUGUGCgUG-------CGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 4343 0.75 0.226664
Target:  5'- gGCGaaGGCGG-CGCGgACGCGGGCGc -3'
miRNA:   3'- -UGCgaCCGCCuGUGCgUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 4799 0.7 0.465125
Target:  5'- gGCGCgguaGCGGGcCGCGgcCugGCGGACGUc -3'
miRNA:   3'- -UGCGac--CGCCU-GUGC--GugCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 5099 0.72 0.356433
Target:  5'- gGCGCcGGCGGAgACgGUggcggcccgGCGCGGGCGa -3'
miRNA:   3'- -UGCGaCCGCCUgUG-CG---------UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 7159 0.67 0.608424
Target:  5'- cGCGCgGGCGcGAgGCGCAUGCucGGcACGc -3'
miRNA:   3'- -UGCGaCCGC-CUgUGCGUGCG--CC-UGCa -5'
29583 3' -60.9 NC_006151.1 + 10227 0.67 0.648074
Target:  5'- -gGCU-GCGGACGCGgAgGgGGGCGa -3'
miRNA:   3'- ugCGAcCGCCUGUGCgUgCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 11330 0.68 0.588671
Target:  5'- cGCGCgGGCgauaccgcgcGGGC-CGCcCGCGGGCGc -3'
miRNA:   3'- -UGCGaCCG----------CCUGuGCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 11773 0.7 0.474192
Target:  5'- uGCGCgaagGGgGGAgaGgGCGCGUGGGCGa -3'
miRNA:   3'- -UGCGa---CCgCCUg-UgCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 13111 0.66 0.667857
Target:  5'- uCGC-GGCGGGuCACGCGCGCucccGCGa -3'
miRNA:   3'- uGCGaCCGCCU-GUGCGUGCGcc--UGCa -5'
29583 3' -60.9 NC_006151.1 + 15889 0.66 0.707033
Target:  5'- cCGCcGGgGGACGCGCGCcCcGACGc -3'
miRNA:   3'- uGCGaCCgCCUGUGCGUGcGcCUGCa -5'
29583 3' -60.9 NC_006151.1 + 17569 0.66 0.657975
Target:  5'- cACGaaGGCGGGgAUGCGCcCGGACc- -3'
miRNA:   3'- -UGCgaCCGCCUgUGCGUGcGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 18161 0.72 0.348844
Target:  5'- -gGCggcGGCGGGCAUGUcggaAUGCGGGCGg -3'
miRNA:   3'- ugCGa--CCGCCUGUGCG----UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 18997 0.66 0.697308
Target:  5'- cGCGC-GGCGcGccaccagccGCGCGCGCGCcGGCGa -3'
miRNA:   3'- -UGCGaCCGC-C---------UGUGCGUGCGcCUGCa -5'
29583 3' -60.9 NC_006151.1 + 19059 0.74 0.273061
Target:  5'- gGCGCaGGCacucGGGCGCGCGCG-GGugGUa -3'
miRNA:   3'- -UGCGaCCG----CCUGUGCGUGCgCCugCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.