miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 105572 0.86 0.042449
Target:  5'- cGCGCUGGCGGccgccuucgACGCGCGCGCGGAgCGg -3'
miRNA:   3'- -UGCGACCGCC---------UGUGCGUGCGCCU-GCa -5'
29583 3' -60.9 NC_006151.1 + 106349 0.82 0.085905
Target:  5'- gACGC-GGUGGACACGCuggACGCGGGCGc -3'
miRNA:   3'- -UGCGaCCGCCUGUGCG---UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 103902 0.81 0.095207
Target:  5'- gGCGCUGGaGGugGCGCGCGCGGcCGc -3'
miRNA:   3'- -UGCGACCgCCugUGCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 104555 0.81 0.097677
Target:  5'- -aGCUGGCcgcccuGGGCGCGCggcGCGCGGACGUg -3'
miRNA:   3'- ugCGACCG------CCUGUGCG---UGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 138111 0.81 0.100208
Target:  5'- cCGCUGGCGGACAUGCuGCGCGGccuggcCGUg -3'
miRNA:   3'- uGCGACCGCCUGUGCG-UGCGCCu-----GCA- -5'
29583 3' -60.9 NC_006151.1 + 20766 0.8 0.108176
Target:  5'- cCGC-GGCGGACGCGCGC-CGGGCGa -3'
miRNA:   3'- uGCGaCCGCCUGUGCGUGcGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 120780 0.8 0.116735
Target:  5'- cCGCUGGCGGACGCgGCcgACGCGGAgCGc -3'
miRNA:   3'- uGCGACCGCCUGUG-CG--UGCGCCU-GCa -5'
29583 3' -60.9 NC_006151.1 + 103645 0.8 0.116735
Target:  5'- gGCGCUGGCGGACGCGgaCACgGCGGAg-- -3'
miRNA:   3'- -UGCGACCGCCUGUGC--GUG-CGCCUgca -5'
29583 3' -60.9 NC_006151.1 + 141312 0.79 0.121862
Target:  5'- uACGCgGGCGGGuccgggauggucacCGCGUACGCGGGCGg -3'
miRNA:   3'- -UGCGaCCGCCU--------------GUGCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 2589 0.79 0.125923
Target:  5'- cGCGCUGGCGG-UAgGCGCGCGG-CGg -3'
miRNA:   3'- -UGCGACCGCCuGUgCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 102542 0.79 0.129132
Target:  5'- gACGgUGGUGG-CGCGCGCGCGGGCc- -3'
miRNA:   3'- -UGCgACCGCCuGUGCGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 68764 0.79 0.135777
Target:  5'- -aGCcGGCGGugGCGCGCGCGG-CGa -3'
miRNA:   3'- ugCGaCCGCCugUGCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 137530 0.78 0.139216
Target:  5'- gACGaggacugGGCGGACugGgACGCGGGCGUc -3'
miRNA:   3'- -UGCga-----CCGCCUGugCgUGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 31756 0.78 0.142735
Target:  5'- gACGCgccugcggcGGCGGGCGCGCGC-CGGGCGg -3'
miRNA:   3'- -UGCGa--------CCGCCUGUGCGUGcGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 67289 0.78 0.142735
Target:  5'- cCGCUGGUGccgcGACGCGCGCGUGGACc- -3'
miRNA:   3'- uGCGACCGC----CUGUGCGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 136986 0.77 0.178234
Target:  5'- cGCGCcgggcGGCGGGCGCGCGCGCacggcgcuGGGCGc -3'
miRNA:   3'- -UGCGa----CCGCCUGUGCGUGCG--------CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 115794 0.76 0.191712
Target:  5'- cGCGCUcGUcgGGAUGCGCGCGCGGAUGg -3'
miRNA:   3'- -UGCGAcCG--CCUGUGCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 113340 0.76 0.191712
Target:  5'- gGCGCUGGCGcugaaGCACGUGCGCGGcCGc -3'
miRNA:   3'- -UGCGACCGCc----UGUGCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 82600 0.76 0.196399
Target:  5'- gACGaacagGGUGGGCcCGCGCGCGGGCGc -3'
miRNA:   3'- -UGCga---CCGCCUGuGCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 85770 0.76 0.206074
Target:  5'- cGCGCUGGCgcuGGACGCGCacucgauccGCGCGcGCGUg -3'
miRNA:   3'- -UGCGACCG---CCUGUGCG---------UGCGCcUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.