miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 5' -53 NC_006151.1 + 67866 0.66 0.972335
Target:  5'- -gGCGcCGAGGUGGcgcGcgCGCCAGCc -3'
miRNA:   3'- gaUGCcGCUCUACCa--CuaGCGGUUGu -5'
29583 5' -53 NC_006151.1 + 71979 0.7 0.852868
Target:  5'- gUGCGGCGGGGgcagcUGGUag-CGCCGGCc -3'
miRNA:   3'- gAUGCCGCUCU-----ACCAcuaGCGGUUGu -5'
29583 5' -53 NC_006151.1 + 84399 0.68 0.909934
Target:  5'- -gGCGGgGAGcgGGUGggCGCgGugAu -3'
miRNA:   3'- gaUGCCgCUCuaCCACuaGCGgUugU- -5'
29583 5' -53 NC_006151.1 + 84832 0.69 0.903631
Target:  5'- -gGCcGCGAGGUGcaGAUCGCCAAgAa -3'
miRNA:   3'- gaUGcCGCUCUACcaCUAGCGGUUgU- -5'
29583 5' -53 NC_006151.1 + 90264 0.68 0.921794
Target:  5'- -cGCGGCGaAGAcGGcGG-CGCCGACGa -3'
miRNA:   3'- gaUGCCGC-UCUaCCaCUaGCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 90780 0.68 0.915394
Target:  5'- --uCGGCGggcgcgcagaagaAGAaGGUGGUCGCCcGCAc -3'
miRNA:   3'- gauGCCGC-------------UCUaCCACUAGCGGuUGU- -5'
29583 5' -53 NC_006151.1 + 93440 0.71 0.782533
Target:  5'- -gGgGGCGAGcgGG-GGUCGCCGccGCGg -3'
miRNA:   3'- gaUgCCGCUCuaCCaCUAGCGGU--UGU- -5'
29583 5' -53 NC_006151.1 + 101049 0.67 0.955448
Target:  5'- -gACGGcCGAcgcGGUGGUCGUCGGCu -3'
miRNA:   3'- gaUGCC-GCUcuaCCACUAGCGGUUGu -5'
29583 5' -53 NC_006151.1 + 104022 0.7 0.860799
Target:  5'- -cGCGGCgGAGGUGGaGcgCGCgCAGCGc -3'
miRNA:   3'- gaUGCCG-CUCUACCaCuaGCG-GUUGU- -5'
29583 5' -53 NC_006151.1 + 104891 0.7 0.827848
Target:  5'- gCUGC-GCGAGGUGGUGGacgCGgCGGCGg -3'
miRNA:   3'- -GAUGcCGCUCUACCACUa--GCgGUUGU- -5'
29583 5' -53 NC_006151.1 + 105682 0.7 0.844728
Target:  5'- cCUACGGCGGcGcgGGgccGA-CGCCGGCGc -3'
miRNA:   3'- -GAUGCCGCU-CuaCCa--CUaGCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 106800 0.73 0.682521
Target:  5'- -gGCGGCGgugcucgucgGGGccccgcUGGUGAUCGCCAugGa -3'
miRNA:   3'- gaUGCCGC----------UCU------ACCACUAGCGGUugU- -5'
29583 5' -53 NC_006151.1 + 112057 0.66 0.962879
Target:  5'- -gGCGGCGGcGGUGGUGGUgggGCUggUg -3'
miRNA:   3'- gaUGCCGCU-CUACCACUAg--CGGuuGu -5'
29583 5' -53 NC_006151.1 + 119786 0.71 0.801149
Target:  5'- --uCGGCGAGAcGGUGAcggaccaCGCCGGCu -3'
miRNA:   3'- gauGCCGCUCUaCCACUa------GCGGUUGu -5'
29583 5' -53 NC_006151.1 + 120159 0.71 0.819124
Target:  5'- -gACGGUGAc--GGUGAcgcUCGCCGACGg -3'
miRNA:   3'- gaUGCCGCUcuaCCACU---AGCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 122174 0.68 0.932653
Target:  5'- -gGCGGCGGGcucGUGGUGc-CGCCGGa- -3'
miRNA:   3'- gaUGCCGCUC---UACCACuaGCGGUUgu -5'
29583 5' -53 NC_006151.1 + 133355 0.69 0.876003
Target:  5'- -gGCGGCGGuGGUGGUGGUgGUgGugGu -3'
miRNA:   3'- gaUGCCGCU-CUACCACUAgCGgUugU- -5'
29583 5' -53 NC_006151.1 + 135533 0.7 0.844728
Target:  5'- -gGCGGCGAGcgGGgcggggagGAUCacguugagcacgGCCAGCGa -3'
miRNA:   3'- gaUGCCGCUCuaCCa-------CUAG------------CGGUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.