miRNA display CGI


Results 41 - 60 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 3' -61.2 NC_006151.1 + 123902 0.66 0.676928
Target:  5'- cCGCCGuGCGGCgCGGCGgCcGUgacGCGGg -3'
miRNA:   3'- cGCGGU-CGCUGaGCCGC-GaCGa--CGCC- -5'
29590 3' -61.2 NC_006151.1 + 92650 0.66 0.676928
Target:  5'- aCGCCGGCaaggcGCUCGcccUGCUGCcgGCGGc -3'
miRNA:   3'- cGCGGUCGc----UGAGCc--GCGACGa-CGCC- -5'
29590 3' -61.2 NC_006151.1 + 92204 0.66 0.676928
Target:  5'- cGCGCCGccGCGGC-C-GCGCUGgaGCa- -3'
miRNA:   3'- -CGCGGU--CGCUGaGcCGCGACgaCGcc -5'
29590 3' -61.2 NC_006151.1 + 84802 0.66 0.676928
Target:  5'- gGCGCCcgaGGCGACcgCGGCcGCggacgggGCcGCGa -3'
miRNA:   3'- -CGCGG---UCGCUGa-GCCG-CGa------CGaCGCc -5'
29590 3' -61.2 NC_006151.1 + 54855 0.66 0.676928
Target:  5'- aGUGCCuGGUG-CUCuGGCaGCcGCUGUGGc -3'
miRNA:   3'- -CGCGG-UCGCuGAG-CCG-CGaCGACGCC- -5'
29590 3' -61.2 NC_006151.1 + 52774 0.66 0.675947
Target:  5'- aGCGCC-GCGGCguccuggucgCGGCuCUGCgaguaguuggugaUGCGGc -3'
miRNA:   3'- -CGCGGuCGCUGa---------GCCGcGACG-------------ACGCC- -5'
29590 3' -61.2 NC_006151.1 + 77432 0.66 0.673984
Target:  5'- gGCGCUcGCGGgagaUCGGCaaguucgggcucacGCUGC-GCGGg -3'
miRNA:   3'- -CGCGGuCGCUg---AGCCG--------------CGACGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 86860 0.66 0.671037
Target:  5'- aGCGcCCGGCGACUacaucuucgugcccgCGGCGCaguacaaccaGCUgGUGGu -3'
miRNA:   3'- -CGC-GGUCGCUGA---------------GCCGCGa---------CGA-CGCC- -5'
29590 3' -61.2 NC_006151.1 + 129244 0.66 0.668088
Target:  5'- uGCGCCccucGGUGACgCGGCGCgagGCauccuuccacgaagcGCGGc -3'
miRNA:   3'- -CGCGG----UCGCUGaGCCGCGa--CGa--------------CGCC- -5'
29590 3' -61.2 NC_006151.1 + 57240 0.66 0.667104
Target:  5'- gGCGCgC-GCGGcCUCGGCGUccGC-GCGGc -3'
miRNA:   3'- -CGCG-GuCGCU-GAGCCGCGa-CGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 58848 0.66 0.667104
Target:  5'- uGCGCCAGCGcguggagcucGCcCGGCGC-GC--CGGg -3'
miRNA:   3'- -CGCGGUCGC----------UGaGCCGCGaCGacGCC- -5'
29590 3' -61.2 NC_006151.1 + 70092 0.66 0.667104
Target:  5'- cGCGUgGGCGGCgaagGGCGCga--GCGGg -3'
miRNA:   3'- -CGCGgUCGCUGag--CCGCGacgaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 84414 0.66 0.667104
Target:  5'- gGCG-CGGUGAUaaggCGGCGC-GCgGCGGc -3'
miRNA:   3'- -CGCgGUCGCUGa---GCCGCGaCGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 109720 0.66 0.667104
Target:  5'- gGCGaCCccgcuGCG-CUCGcCGCUGgaGCGGa -3'
miRNA:   3'- -CGC-GGu----CGCuGAGCcGCGACgaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 100854 0.66 0.664152
Target:  5'- aGCGUCAacgugcGCGACUgGGcCGCcgugaaccuggaggUGCUGCGc -3'
miRNA:   3'- -CGCGGU------CGCUGAgCC-GCG--------------ACGACGCc -5'
29590 3' -61.2 NC_006151.1 + 123071 0.66 0.657255
Target:  5'- aCGCCgAGCGcCggCGGCGCcUGUacGCGGa -3'
miRNA:   3'- cGCGG-UCGCuGa-GCCGCG-ACGa-CGCC- -5'
29590 3' -61.2 NC_006151.1 + 105350 0.66 0.657255
Target:  5'- cGCGCUgcagacGGCGACcauggaGGUGCUggcGCUGCGc -3'
miRNA:   3'- -CGCGG------UCGCUGag----CCGCGA---CGACGCc -5'
29590 3' -61.2 NC_006151.1 + 96633 0.66 0.657255
Target:  5'- gGCGCgCAGCGccucgaGCUCGGCgGCgaggGCccggGCGa -3'
miRNA:   3'- -CGCG-GUCGC------UGAGCCG-CGa---CGa---CGCc -5'
29590 3' -61.2 NC_006151.1 + 72751 0.66 0.657255
Target:  5'- aGCGCCgAGUcGCU-GGCGCacaGCgGCGGg -3'
miRNA:   3'- -CGCGG-UCGcUGAgCCGCGa--CGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 59428 0.66 0.656268
Target:  5'- gGCGCCAGCucGGCgUCGGCcgccgccGCcGCgaccGCGGc -3'
miRNA:   3'- -CGCGGUCG--CUG-AGCCG-------CGaCGa---CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.