miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 3' -61.2 NC_006151.1 + 17110 0.86 0.038545
Target:  5'- gGCGCCGGgGGCUccggCGGCGgUGCUGCGGg -3'
miRNA:   3'- -CGCGGUCgCUGA----GCCGCgACGACGCC- -5'
29590 3' -61.2 NC_006151.1 + 39802 0.82 0.07406
Target:  5'- cCGCUGGgGGCUCGGCGCcccGCUGCGGc -3'
miRNA:   3'- cGCGGUCgCUGAGCCGCGa--CGACGCC- -5'
29590 3' -61.2 NC_006151.1 + 135471 0.8 0.111546
Target:  5'- cGCGCCAGCGugUCcGCGCggGCcagGCGGc -3'
miRNA:   3'- -CGCGGUCGCugAGcCGCGa-CGa--CGCC- -5'
29590 3' -61.2 NC_006151.1 + 128044 0.79 0.129738
Target:  5'- cGCGgCAGCGGCggcagCGGCgGCUGC-GCGGg -3'
miRNA:   3'- -CGCgGUCGCUGa----GCCG-CGACGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 39156 0.79 0.129738
Target:  5'- cGCGCCgcGGCGGCcucUCGGCGCUGCUcGCc- -3'
miRNA:   3'- -CGCGG--UCGCUG---AGCCGCGACGA-CGcc -5'
29590 3' -61.2 NC_006151.1 + 105025 0.78 0.136389
Target:  5'- -aGCUGGUGACgcaggCGGCGCUGCUGCu- -3'
miRNA:   3'- cgCGGUCGCUGa----GCCGCGACGACGcc -5'
29590 3' -61.2 NC_006151.1 + 99560 0.77 0.158259
Target:  5'- gGCG-CGGCGcGCgCGGCGCUGCUGCGc -3'
miRNA:   3'- -CGCgGUCGC-UGaGCCGCGACGACGCc -5'
29590 3' -61.2 NC_006151.1 + 118105 0.77 0.162198
Target:  5'- uGCGCC-GCGACcugcUGGCGCUGCUcGUGGc -3'
miRNA:   3'- -CGCGGuCGCUGa---GCCGCGACGA-CGCC- -5'
29590 3' -61.2 NC_006151.1 + 39334 0.77 0.178853
Target:  5'- cUGCUcGCGGCUCGGCGCgGC-GCGGc -3'
miRNA:   3'- cGCGGuCGCUGAGCCGCGaCGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 68261 0.76 0.187737
Target:  5'- cGCGCgCGGCGACggucgCGGCGCcggGCgccacgGCGGc -3'
miRNA:   3'- -CGCG-GUCGCUGa----GCCGCGa--CGa-----CGCC- -5'
29590 3' -61.2 NC_006151.1 + 132140 0.76 0.192324
Target:  5'- cGCGCCGGCGGugguugaCGGCGCgcaGCUGCGcGg -3'
miRNA:   3'- -CGCGGUCGCUga-----GCCGCGa--CGACGC-C- -5'
29590 3' -61.2 NC_006151.1 + 107001 0.76 0.192324
Target:  5'- gGCGCCgcagcuggAGCGGCucUCGGCGCUGaucGCGGc -3'
miRNA:   3'- -CGCGG--------UCGCUG--AGCCGCGACga-CGCC- -5'
29590 3' -61.2 NC_006151.1 + 53964 0.76 0.197008
Target:  5'- aCGCCAGCGGCggCGGCGCcuccgcggGCgucGCGGc -3'
miRNA:   3'- cGCGGUCGCUGa-GCCGCGa-------CGa--CGCC- -5'
29590 3' -61.2 NC_006151.1 + 56359 0.76 0.206675
Target:  5'- cCGCCGGCGcggaaGCUaCGGCGcCUGCUGCa- -3'
miRNA:   3'- cGCGGUCGC-----UGA-GCCGC-GACGACGcc -5'
29590 3' -61.2 NC_006151.1 + 104060 0.75 0.211661
Target:  5'- cGCGCgCGGcCGACgCGGCGCUGCgccGCGc -3'
miRNA:   3'- -CGCG-GUC-GCUGaGCCGCGACGa--CGCc -5'
29590 3' -61.2 NC_006151.1 + 65142 0.75 0.224051
Target:  5'- cGCGCCAGCGACgugaucuucagcgccUugCGGCGC-GCgagGCGGa -3'
miRNA:   3'- -CGCGGUCGCUG---------------A--GCCGCGaCGa--CGCC- -5'
29590 3' -61.2 NC_006151.1 + 15222 0.75 0.232649
Target:  5'- cGCGCCAGCGcccCUCGGCcccCUGCUGgcaGGc -3'
miRNA:   3'- -CGCGGUCGCu--GAGCCGc--GACGACg--CC- -5'
29590 3' -61.2 NC_006151.1 + 71941 0.75 0.232649
Target:  5'- aGCaCCAGCGAgcgcguggccgcCUCGGCGUUGUcGCGGu -3'
miRNA:   3'- -CGcGGUCGCU------------GAGCCGCGACGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 117297 0.74 0.243785
Target:  5'- cGCGCgAGCuGCUCGGCGCUcGCcacgccgaggGCGGc -3'
miRNA:   3'- -CGCGgUCGcUGAGCCGCGA-CGa---------CGCC- -5'
29590 3' -61.2 NC_006151.1 + 57516 0.74 0.249518
Target:  5'- cGCGgCGGCGGCggccgccucCGGCGCgGCcGCGGg -3'
miRNA:   3'- -CGCgGUCGCUGa--------GCCGCGaCGaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.